Releases: cov-lineages/pango-designation
pango designations v1.18
Release notes
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 13...
Contributors
Assets 2
pango designations v1.17
Notes
| lineage | designation date |
|---|---|
| BQ.1.22 | 2022-11-02 |
| BF.7.4.2 | 2022-11-02 |
| CP.1.2 | 2022-11-02 |
| CP.1.3 | 2022-11-02 |
| CP.2 | 2022-11-02 |
| CP.3 | 2022-11-02 |
| CP.4 | 2022-11-02 |
| CP.5 | 2022-11-02 |
| CP.6 | 2022-11-02 |
| CR.1.1 | 2022-11-02 |
| BS.1.2 | 2022-11-02 |
| CM.5.1 | 2022-11-02 |
| BL.5 | 2022-11-02 |
| XAY.1.1 | 2022-11-03 |
| BQ.1.1.20 | 2022-11-03 |
| BQ.1.1.21 | 2022-11-03 |
| BQ.1.1.22 | 2022-11-03 |
| CZ.1 | 2022-11-03 |
| XBB.4.1 | 2022-11-03 |
| BQ.1.23 | 2022-11-03 |
| BA.5.2.38 | 2022-11-03 |
| DA.1 | 2022-11-03 |
| BF.7.13 | 2022-11-03 |
| BF.7.13.1 | 2022-11-03 |
| BF.7.13.2 | 2022-11-03 |
| XBF | 2022-11-03 |
| CA.3.1 | 2022-11-03 |
| CM.7 | 2022-11-04 |
| BA.5.2.39 | 2022-11-04 |
| DB.1 | 2022-11-04 |
| BF.33 | 2022-11-04 |
| BA.4.6.5 | 2022-11-04 |
| DC.1 | 2022-11-04 |
| BQ.1.1.23 | 2022-11-04 |
| BQ.1.1.24 | 2022-11-04 |
| DD.1 | 2022-11-04 |
| BE.6 | 2022-11-04 |
| BE.7 | 2022-11-04 |
| BE.8 | 2022-11-04 |
| BA.5.11 | 2022-11-04 |
| DB.2 | 2022-11-04 |
| BQ.1.24 | 2022-11-04 |
| BA.5.2.40 | 2022-11-04 |
| BQ.1.25 | 2022-11-05 |
| CQ.1.1 | 2022-11-05 |
| CR.1.2 | 2022-11-05 |
| DE.1 | 2022-11-05 |
| DE.2 | 2022-11-05 |
| CM.8 | 2022-11-05 |
| DF.1 | 2022-11-06 |
| XBB.1.4 | 2022-11-06 |
| BF.34 | 2022-11-08 |
| XBB.1.5 | 2022-11-08 |
| DG.1 | 2022-11-09 |
| DH.1 | 2022-11-09 |
| BR.2.1 | 2022-11-09 |
| BN.1.7 | 2022-11-10 |
| CM.8.1 | 2022-11-10 |
| CM.9 | 2022-11-10 |
| CM.6.1 | 2022-11-10 |
| BE.9 | 2022-11-12 |
| BQ.1.26 | 2022-11-12 |
| BF.7.5.1 | 2022-11-13 |
| BA.5.2.41 | 2022-11-13 |
| CK.3 | 2022-11-14 |
| XBG | 2022-11-14 |
| BA.5.1.31 | 2022-11-15 |
| XBH | 2022-11-16 |
| BW.1.1 | 2022-11-20 |
| BN.1.8 | 2022-11-22 |
| BQ.1.1.25 | 2022-11-22 |
| CM.2.1 | 2022-11-22 |
| DJ.1 | 2022-11-23 |
| DJ.1.1 | 2022-11-23 |
| BA.5.2.42 | 2022-11-23 |
| XBB.1.4.1 | 2022-11-25 |
| BA.5.2.43 | 2022-11-26 |
| BN.1.9 | 2022-11-28 |
| CH.1.1.1 | 2022-11-29 |
| CH.1.1.2 | 2022-11-29 |
| BA.5.2.44 | 2022-11-29 |
| DK.1 | 2022-11-30 |
| BQ.1.1.26 | 2022-12-01 |
| XBJ | 2022-12-01 |
| CH.3 | 2022-12-01 |
| BQ.1.1.27 | 2022-12-02 |
| DL.1 | 2022-12-03 |
| BA.5.2.45 | 2022-12-03 |
| BQ.1.1.28 | 2022-12-04 |
| BQ.1.26.1 | 2022-12-04 |
Commits
6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - rquiroga7, Fri Dec 2 11:48:37 2022 -0300 : Update BQ.1.1.25 mutations
f3ef169 - Cornelius Roemer, Thu Dec 1 19:03:33 2022 +0100 : Added lineage CH.3 (S:486P) from #1375 with 14 designations
d37a34d - Cornelius Roemer, Thu Dec 1 18:34:29 2022 +0100 : Added recombinant XBJ (BA.2.3.20/BA.5.2) with 23 designations from #1268
947e598 - Cornelius Roemer, Thu Dec 1 18:14:35 2022 +0100 : Added lineage BQ.1.1.26 (S:E471Q) with 20 designations
9a9e0ef - Cornelius Roemer, Wed Nov 30 23:40:09 2022 +0100 : Added 20 extra designated sequences for BQ.1.1.25
fa14664 - Cornelius Roemer, Wed Nov 30 23:38:35 2022 +0100 : Added lineage DK.1 (BQ.1.1.7.1, S:339N) with 10 designations
dcb449a - Cornelius Roemer, Tue Nov 29 17:47:30 2022 +0100 : Added lineage BA.5.2.44 (ORF1a:L2564F) with 900 designations
f01bae3 - Cornelius Roemer, Tue Nov 29 17:17:14 2022 +0100 : Added lineages CH.1.1.1 (S:N185D) and CH.1.1.2 (S:T883I) with 50/20 designations
71a5573 - InfrPopGen, Mon Nov 28 15:13:34 2022 +0000 : Merge pull request #1373 from InfrPopGen/master
35579c0 - InfrPopGen, Mon Nov 28 15:11:49 2022 +0000 : Added new lineage BN.1.9 from #1327 with 24 new sequence designations, and 0 updated
91d5b04 - InfrPopGen, Sat Nov 26 16:13:57 2022 +0000 : Merge pull request #1371 from InfrPopGen/master
5c20270 - InfrPopGen, Sat Nov 26 16:12:20 2022 +0000 : Added new lineage BA.5.2.43 from #1312 with 31 new sequence designations, and 0 updated designations
4c6a85b - InfrPopGen, Fri Nov 25 16:46:09 2022 +0000 : Merge pull request #1368 from InfrPopGen/master
2bb9531 - InfrPopGen, Fri Nov 25 16:44:46 2022 +0000 : Added new lineage XBB.1.4.1 from #1352 with 8 new sequence designations, and 3 updated designations from XBB.1.4
fb90126 - InfrPopGen, Wed Nov 23 20:28:34 2022 +0000 : Merge pull request #1365 from InfrPopGen/master
1f8b3b0 - InfrPopGen, Wed Nov 23 20:27:10 2022 +0000 : Added new lineage BA.5.2.42 from #1266 with 50 new sequence designations, and 0 updated designations
9dddb82 - InfrPopGen, Wed Nov 23 16:21:53 2022 +0000 : Merge pull request #1364 from InfrPopGen/master
d0dbb33 - InfrPopGen, Wed Nov 23 16:20:24 2022 +0000 : Added new lineage DJ.1.1 from #1245 with 0 new sequence designations, and 17 updated designations from DJ.1
2bef77b - InfrPopGen, Wed Nov 23 16:00:02 2022 +0000 : Merge pull request #1363 from InfrPopGen/master
89c833a - InfrPopGen, Wed Nov 23 15:57:39 2022 +0000 : Added new recombinant lineage DJ.1 from #1245 with 87 new sequence designations, and 61 updated designations from BA.5.1.25
11b0915 - Cornelius Roemer, Tue Nov 22 17:44:26 2022 +0100 : Linked BW.1.1 (S:V486A) to #1341 in lineage notes
c081af4 - Cornelius Roemer, Tue Nov 22 17:40:14 2022 +0100 : Added lineage CM.2.1 (S:F486S) from issue #1356 with 7 designations
188716e - Cornelius Roemer, Tue Nov 22 16:54:19 2022 +0100 : Added lineage BQ.1.1.25 (S:F490S) with 22 designations
9fd95c8 - Cornelius Roemer, Tue Nov 22 16:47:42 2022 +0100 : Added lineage BN.1.8 (S:A475V) with 11 designations
4374c80 - Cornelius Roemer, Sun Nov 20 19:27:38 2022 +0100 : Added lineage BW.1.1 (S:F486S) with 25 designations
ceef3f2 - InfrPopGen, Wed Nov 16 17:31:46 2022 +0000 : Merge pull request #1346 from InfrPopGen/master
6da3030 - InfrPopGen, Wed Nov 16 17:30:02 2022 +0000 : Added new recombinant lineage XBH from #1229 with 36 new sequence designations, and 0 updated designations
5a35d87 - InfrPopGen, Tue Nov 15 15:01:01 2022 +0000 : Merge pull request #1344 from InfrPopGen/master
1eeb05e - InfrPopGen, Tue Nov 15 14:59:39 2022 +0000 : Added new lineage BA.5.1.31 from #991 with 31 new sequence designations, and 1 updated designations from BA.5.1
04e9326 - Cornelius Roemer, Tue Nov 15 00:07:48 2022 +0100 : fix: Use monophyletic BA.5.2.41 designations from Usher tree
9a02ce3 - InfrPopGen, Mon Nov 14 17:34:50 2022 +0000 : Merge pull request #1338 from InfrPopGen/master
4941af7 - InfrPopGen, Mon Nov 14 17:32:32 2022 +0000 : Added new recombinant lineage XBG from #896 with 14 new sequence designations, and 0 updated designations
b336776 - InfrPopGen, Mon Nov 14 16:11:44 2022 +0000 : Merge pull request #1337 from InfrPopGen/master
504be11 - InfrPopGen, Mon Nov 14 16:09:56 2022 +0000 : Added new lineage CK.3 from #1121 with 76 new sequence designations, and 15 updated designations from CK.1
b3301b5 - InfrPopGen, Sun Nov 13 14:54:51 2022 +0000 : Merge pull request #1331 from InfrPopGen/master
41a7f39 - InfrPopGen, Sun Nov 13 14:53:32 2022 +0000 : Added new lineage BA.5.2.41 from #1328 with 30 new sequence designations, and 0 updated designations
005b1e7 - InfrPopGen, Sun Nov 13 13:01:16 2022 +0000 : Merge pull request #1329 from InfrPopGen/master
073a80e - InfrPopGen, Sun Nov 13 13:00:12 2022 +0000 : Added new lineage BF.7.5.1 from #1317 with 17 new sequence designations, and 5 updated designations from BF.7.5
41d3aec - InfrPopGen, Sat Nov 12 17:01:17 2022 +0000 : Merge pull request #1323 from InfrPopGen/master
97c2640 - InfrPopGen, Sat Nov 12 16:59:30 2022 +0000 : Added new lineage BQ.1.26 from #1315 with 15 new sequence designations, and 0 updated designations
78d95ee - InfrPopGen, Sat Nov 12 15:09:08 2022 +0000 : Merge pull request #1322 from InfrPopGen/master
0ae1ea8 - InfrPopGen, Sat Nov 12 15:07:30 2022 +0000 : Added new lineage BE.9 from #1302 with 233 new sequence designations, and 0 updated designations
c18407f - Cornelius Roemer, Thu Nov 10 15:11:36 2022 +0100 : Added lineage CM.6.1 (S:A348S) with 6 designations
606b44e - Cornelius Roemer, Thu Nov 10 15:09:37 2022 +0100 : Added lineage CM.9 (S:S256L) with 20 designations, added extra CM.6 designations
(piranha) [11:43:51] ~/repositories/pango-designation % git log --pretty=format:"%h - %an, %ad : %s"
42db19e - Áine O'Toole, Mon Dec 5 11:34:14 2022 +0000 : Update init.py
6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - ...
Contributors
Assets 2
pango designations v1.16
What's changed:
- Added lineage CM.5.1 (S:Q675R) with 8 designations
- Added lineage BS.1.2 (S:T430I) with 5 designations
- Added lineage CR.1.1 (S:V62I) with 20 designations
- Added lineage CP.6 (S:V1264L) with 20 designations
- Added lineage CP.5 (S:C1247F) with 40 designations
- Added lineage CP.4 (S:I770V) with 20 designations
- Added lineage CP.3 (S:N460Y) with 10 designations
- Added lineage CP.2 (S:N334K) with 10 designations
- Added lineage CP.1.3 (S:G446S) with 30 designations
- Added CP.1.2 (S:K150N) with 30 designations
- Added lineage BF.7.4.2
- Added lineage BQ.1.22 (S:R346T after C26681T) with 13 designations
- Added lineage BQ.1.22 (S:R346T after C26681T) with 13 designations
- Added new lineage BA.2.9.7 from #864 with 490 new sequences
- Added new lineage CY.1 from #1247 with 3 new sequence designations
- Added lineage BQ.1.21 (S:R346S, S:Y144-) with 15 designations
- Added new lineage BF.32 from #1246 with 138 new sequence designations
- Added new BM.1.1.1 designations
- Add 15 new CJ.1 designations
- Added lineages BF.31(.1) with 900/150 designations
- Added new lineage BF.7.4.1 from #1253
- Added new lineage BN.1.3.1 from #1257
- Added lineages BQ.1.1.17-19
- Added lineages BQ.1.1.15/16
- Added lineages BQ.1.1.14 and CW.1 (BQ.1.1.14 + S:G446S)
- Added lineage BQ.1.1.13 (E:V62F and S:Y144-) with 7 designations
- Added lineage XBB.1.3 (S:A484T) with 8 designations
- Added lineage CA.6 (S:L452R) with 7 designations
- Added lineage CV.1 (BM.1.1.3 with S:L452R) with 12 designations
- Added lineage BA.5.1.30 (ORF6:D6G) with 1000 designations
- Added lineage BU.3 (S:K147N, S:N450D) with 9 designations
- Added new lineage XBE from #1246 with 104 new sequence designations
- Added lineages CM.4-6
- Added lineages BY.1.(1-2), BY.1.1(1-2).1
- Added lineages BQ.1.1.11 (S:S494P after ORF1a:P2537H) and BQ.1.1.12 (
- Added lineage BQ.1.1.11 (S:S494P) with 5 designations
- Added lineage CQ.2 (S:V445A) with 4 designations
- Added lineages CK.2, CK.2.1, CK.2.1.1
- Added lineages BN.1.2.1, BN.1.(4-6)
- Added lineages BQ.1.1.(3-10)
- Added lineage XBB.5 (S:A653V) with 4 designations
- Added lineage XBB.3.1 (S:Q677R) with 13 designations,
- Added lineage XBB.4 (S:K444R) with 2 designations
- Added lineage BQ.1.1.2 (S:D253G) with 9 designations
- Added new lineage BA.5.2.37 from #1117
- Added new lineage BA.5.6.4 from #1191
- Added new lineage BT.2 from #1192
- Added lineage XBB.1.2 (S:S640F) with 5 designations
- Added lineage CU.1 (BA.5.1.26 with S:T95I, S:T547K)
- Added lineages BE.1.4.(1-4)
- Added lineage BE.1.4 (ORF1b:V1787I) with 2500 designations
- Added lineages BF.7.8-12,
- Added lineages BF.7.7 (S:D80G) and BF.7.8 (S:T883I)
- Added lineages BF.7.(4/5/6)
- Added lineage BF.11.5 (ORF8:I121L)
- Added lineage BF.11.4 (S:S704L)
- Added lineage BF.11.3 (ORF1a:L122F)
- Added lineage BF.11.2 (S:K147N)
- Added lineage BF.11.1 (S:S1252F)
- Added lineage CA.6 (BA.2.75.2 with ORF1a:Y196H)
- Added lineage BQ.1.20 (S:A348S)
- Added lineage BL.1.4
- Added lineage BU.2 (S:V445A)
- Added lineage BQ.1.19 (S:S494P)
- Added CM.3 (S:G485D)
- Added lineage BM.1.1.3 (ORF10:A8V)
- Added lineage CA.5 (S:A260D, S:Q613H)
- Added lineage CA.4 (S:F486L) with
- [Added lineage CA.3 (N:M101I)](https://github.com/...
v1.15.1
Bump __init__.py version string correctly
v1.15
New lineages with designation date
| lineage | designation date |
|---|---|
| BA.5.10 | 2022-08-18 |
| BA.5.1.11 | 2022-08-18 |
| XAR | 2022-08-18 |
| BA.2.75.2 | 2022-08-19 |
| BA.2.76.2 | 2022-08-19 |
| BA.5.2.6 | 2022-08-21 |
| BA.2.75.3 | 2022-08-21 |
| BA.5.2.7 | 2022-08-21 |
| BF.15 | 2022-08-21 |
| BA.4.8 | 2022-08-21 |
| BA.2.75.4 | 2022-08-21 |
| BL.1 | 2022-08-21 |
| BA.5.1.12 | 2022-08-22 |
| XAS | 2022-08-22 |
| BA.5.1.13 | 2022-08-22 |
| BA.2.75.5 | 2022-08-22 |
| XAT | 2022-08-22 |
| BA.5.1.14 | 2022-08-22 |
| XAU | 2022-08-23 |
| XAV | 2022-08-23 |
| BF.16 | 2022-08-23 |
| BE.1.1.1 | 2022-08-24 |
| XAW | 2022-08-25 |
| XAY | 2022-08-25 |
| BE.1.3 | 2022-08-26 |
| BA.5.2.8 | 2022-08-26 |
| BA.5.1.15 | 2022-08-26 |
| BA.5.1.16 | 2022-08-26 |
| BA.5.1.17 | 2022-08-26 |
| BA.5.2.9 | 2022-08-26 |
| BA.5.2.10 | 2022-08-26 |
| BA.5.2.11 | 2022-08-26 |
| BA.5.2.12 | 2022-08-26 |
| BF.17 | 2022-08-26 |
| BF.18 | 2022-08-26 |
| BF.19 | 2022-08-26 |
| BF.20 | 2022-08-26 |
| BF.21 | 2022-08-26 |
| XAZ | 2022-08-27 |
| BA.4.1.9 | 2022-08-27 |
| BA.5.1.18 | 2022-08-28 |
| BA.5.5.2 | 2022-08-29 |
| BM.1 | 2022-08-30 |
| BF.22 | 2022-08-31 |
| BA.2.3.20 | 2022-09-02 |
| BN.1 | 2022-09-02 |
| BP.1 | 2022-09-02 |
| BA.5.5.3 | 2022-09-02 |
| BQ.1 | 2022-09-02 |
| BN.2 | 2022-09-03 |
| BN.2.1 | 2022-09-03 |
| BR.1 | 2022-09-03 |
| BM.2 | 2022-09-03 |
| BM.3 | 2022-09-03 |
| BM.1.1 | 2022-09-03 |
| BL.2 | 2022-09-03 |
| BL.3 | 2022-09-03 |
| BA.2.75.6 | 2022-09-03 |
| BA.2.75.7 | 2022-09-03 |
| BL.4 | 2022-09-03 |
| BA.5.1.19 | 2022-09-04 |
| BA.4.6.1 | 2022-09-05 |
| BA.5.2.14 | 2022-09-06 |
| BA.5.2.13 | 2022-09-06 |
| BM.4 | 2022-09-07 |
| BM.4.1 | 2022-09-07 |
| BA.5.1.20 | 2022-09-07 |
| BQ.1.1 | 2022-09-09 |
| BS.1 | 2022-09-12 |
| BA.5.2.15 | 2022-09-12 |
| BA.5.1.21 | 2022-09-14 |
| BA.5.2.16 | 2022-09-14 |
| BT.1 | 2022-09-14 |
| XBA | 2022-09-14 |
| BA.5.2.17 | 2022-09-15 |
| BF.23 | 2022-09-15 |
| BU.1 | 2022-09-16 |
| BA.5.2.18 | 2022-09-17 |
| BL.1.1 | 2022-09-17 |
| BL.1.2 | 2022-09-17 |
| XBB | 2022-09-17 |
| BR.2 | 2022-09-17 |
| BM.1.1.1 | 2022-09-18 |
| BA.4.1.10 | 2022-09-18 |
| BA.5.10.1 | 2022-09-18 |
| BA.2.83 | 2022-09-18 |
| BA.5.2.19 | 2022-09-18 |
| BA.5.2.20 | 2022-09-18 |
| BA.5.2.21 | 2022-09-18 |
| BV.1 | 2022-09-18 |
| BW.1 | 2022-09-18 |
| BM.5 | 2022-09-18 |
| BY.1 | 2022-09-19 |
| BM.4.1.1 | 2022-09-19 |
| BF.24 | 2022-09-19 |
| BA.2.84 | 2022-09-19 |
| BA.2.31.1 | 2022-09-19 |
| BA.5.2.22 | 2022-09-20 |
| BA.2.75.8 | 2022-09-20 |
| BA.5.2.23 | 2022-09-20 |
| BE.1.2.1 | 2022-09-21 |
| BZ.1 | 2022-09-21 |
| BR.3 | 2022-09-21 |
| CA.1 | 2022-09-21 |
| BA.5.2.24 | 2022-09-22 |
| BF.25 | 2022-09-22 |
| BV.2 | 2022-09-23 |
| BQ.1.2 | 2022-09-23 |
| BQ.1.3 | 2022-09-23 |
| XBC | 2022-09-24 |
| BA.5.2.25 | 2022-09-25 |
| BA.5.2.26 | 2022-09-29 |
| BA.5.2.27 | 2022-09-29 |
| BA.5.2.28 | 2022-09-29 |
| BA.5.1.22 | 2022-09-29 |
| BA.5.1.23 | 2022-09-29 |
| BA.5.1.24 | 2022-09-29 |
| BA.5.1.25 | 2022-09-29 |
| BF.26 | 2022-09-29 |
| BF.27 | 2022-09-29 |
| BF.28 | 2022-09-29 |
| CA.2 | 2022-09-30 |
| BA.2.75.9 | 2022-09-30 |
| CB.1 | 2022-09-30 |
| BL.1.3 | 2022-09-30 |
| BS.1.1 | 2022-09-30 |
| BA.2.85 | 2022-09-30 |
| BA.5.2.29 | 2022-09-30 |
| BE.4 | 2022-09-30 |
| BE.4.1 | 2022-09-30 |
| BE.4.1.1 | 2022-09-30 |
| BE.1.1.2 | 2022-09-30 |
| CC.1 | 2022-09-30 |
| BA.5.2.30 | 2022-09-30 |
| BA.5.2.31 | 2022-09-30 |
| CD.1 | 2022-09-30 |
| CD.2 | 2022-09-30 |
| BA.5.2.32 | 2022-09-30 |
| BA.5.2.33 | 2022-09-30 |
| CE.1 | 2022-09-30 |
| BA.5.1.26 | 2022-09-30 |
| BA.5.1.27 | 2022-09-30 |
| BA.5.1.28 | 2022-09-30 |
| CF.1 | 2022-09-30 |
| CG.1 | 2022-10-03 |
| XBB.1 | 2022-10-03 |
| BQ.1.4 | 2022-10-03 |
| XBC.1 | 2022-10-03 |
What's Changed
- Added new lineage BA.5.2.6 from #870 with 65 new designations and 14 updated from BA.5.2 by @corneliusroemer in #970
- Added new lineage BA.2.75.3 from #965 with 104 new designations and 3 updated from BA.2.75 by @corneliusroemer in #971
- Added new lineage BA.5.2.7 with 59 new designations and 3 updated from BA.5.2 by @corneliusroemer in #972
- Added new lineage BF.15 from #893 with 53 new designations and 3 updated from BA.5.2.1 by @corneliusroemer in #973
- Added new lineage BA.4.8 from #670 with 49 new designations and 8 changed from BA.4 by @corneliusroemer in #974
- Added new lineage BA.2.75.4 from #935 with 14 new designations by @corneliusroemer in #975
- Added new lineage BL.1 from #944 with 27 new designations by @corneliusroemer in #976
- Added new lineage BA.5.1.12 from #902 with 56 new designations and 3 updated from BA.5.1 by @corneliusroemer in #977
- Added new recombinant lineage XAS from #882 with 45 new sequence designations, and 3 updated designations from BA.4 by @InfrPopGen in #978
- Added new lineage BA.2.75.5 from #947 with 23 new designations by @corneliusroemer in #979
- Added new recombinant lineage XAT from #885 with 74 new sequence designations, and 0 updated designations by @InfrPopGen in #980
- Added new recombinant lineage XAU from #894 with 77 new sequence designations, and 0 updated designations by @InfrPopGen in #982
- Added new recombinant lineage XAV from #911 with 59 new sequence designations, and 2 updated designations from BA.5 by @InfrPopGen in #984
- Added new lineage BF.16 from #942 with 54 new sequence designations, and 5 updated designations from BA.5.2.1 by @InfrPopGen in #986
- Added new recombinant lineage XAZ from #797 with 730 new sequence designations, and 244 updated from BA.5 by @InfrPopGen in #997
- Added new lineage BA.4.1.9 from #926 with 62 new sequence designations, and 5 updated designations from BA.4.1 by @InfrPopGen in #998
- Added new lineage BA.5.1.18 from #930 with 52 new sequence designations, and 11 updated designations from BA.5.1 by @InfrPopGen in #1001
- Added new lineage BA.5.5.2 from #938 with 446 new sequence designations, and 64 updated designations from BA.5.5 by @InfrPopGen in #1004
- Added new lineage BM.1 from #965 with 45 new designations and 8 updated from BA.2.75 and BA.2.75.3 by @corneliusroemer in #1008
- Added new lineage BA.5.1.19 from #999 with 177 new sequence designations, and 23 updated designations from BA.5.1 by @InfrPopGen in #1028
- Added new lineage BA.4.6.1 from #900 with 191 new sequence designations, and 21 updated designations from BA.4.6 by @InfrPopGen in #1033
- Added new lineage BA.5.2.13 from #959 with 66 new sequence designations, and 3 updated designations from BA.5.2 by @InfrPopGen in #1044
- Fixing typo in lineage designation by @InfrPopGen in #1045
- Added new lineage BM.4 from #957 with 10 new sequence designations, and 7 updated designations from BA.2.75* by @InfrPopGen in #1048
- Added new lineage BA.5.1.20 from #1000 with 30 new sequence designations, and 3 updated designations from BA.5.1 by @InfrPopGen in #1049
- Added new lineage BA.5.2.14 from #1002 with 9 new sequence designations, and 0 updated designations by @InfrPopGen in #1055
- Added new lineage BA.5.2.15 from #1054 with 34 new sequence designations, and 1 updated designations from BA.5.2 by @InfrPopGen in #1057
- Added new lineage BA.5.1.21 from #958 with 911 new sequence designations, and 129 updated designations from BA.5.1 by @InfrPopGen in #1064
- Added new sublineage BT.1 from #958 with 0 new sequence designations, and 188 updated designations from BA.5.1.21, and updated lineages.csv by @InfrPopGen in #1067
- Added new recombinant lineage XBA from #844 with 4 new sequence designations, and 0 updated designations by @InfrPopGen in #1068
- Added new lineage BA.5.2.17 from #1019 with 36 new sequence designations, and 0 updated designations by @InfrPopGen in #1070
- Added new lineage BF.23 from #1036 with 136 new sequence designations, and 34 updated designations from BA.5.2.1 by @InfrPopGen in #1071
- Added new lineage BA.5.2.22 from #945 with 1209 new sequence designations, and 11 updated designations from BA.5.2.21, one from BA.5.2.16, and 87 from BA.5.2 by @InfrPopGen in #1092
- Added new lineage BA.5.2.23 from #1090 with 25 new sequence designations, and 0 updated designations by @InfrPopGen in #1093
- Added new recombinant lineage XBC from #1100 with 7 new sequence designations, and 0 updated designations by @InfrPopGen in #1107
- Added new lineage BA.5.2.25 from #1111 with 25 new sequence designations, and 0 updated by @InfrPopGen in #1116
- Added new lineage BA.2.85 from #983 with 148 new sequence designations, and 0 updated designations by @InfrPopGen in...
Contributors
Assets 2
pango-designation v1.14
- Added lineage BA.2.75.1 from #856 with 42 new sequence designations, and 2 updated designations from BA.2.75
- Added new lineage BA.2.10.4 from #898 with 7 new sequence designations
- Added new lineage BJ.1 from #915 with 6 new sequence designations
- Added new lineage BA.2.38.3 from #840 with 27 new sequence designations, and 0 updated designations
- Added new lineage BA.2.75.2 from #963 with 10 new designations
- Added new lineage BA.2.76.1 from #899 with 18 new sequence designations
- Added new lineage BA.2.76.2 from #939 with 26 new designations
- Added new lineage BA.2.9.6 from #671 with 410 new sequence designations, and 1 updated designation from BA.2
- Added new lineage BA.5.1.10 from #901 with 910 new sequence designations, and 203 updated designations from BA.5.1
- Added new lineage BA.5.1.11 from #908 with 327 new designations and 47 updated from BA.5.1
- Added new lineage BA.5.1.9 from #786 with 161 new sequence designations, and 52 updated designations from BA.5.1
- Added new lineage BA.5.10 from #936 with 37 new sequence designations, and 3 updated designations from BA.5
- Added new lineage BA.5.5.1 from #873 with 93 new sequence designations, and 0 updated designations
- Added new lineage BA.5.6.2 from #903 with 45 new sequence designations, and 24 updated designations from BA.5.6
- Added new lineage BF.13 from #883 with 29 new sequence designations, and 7 updated designations from BA.5.2.1
- Added new lineage BE.1.2 from #923 with 41 new sequence designations
- Added new lineage BF.14 from #843 with 36 new designations and 24 updated from BA.5.2.1
- Added new lineage BG.6 from #836 with 36 new sequence designations and 5 updated from BA.2.12.1
- Added new lineage BH.1 from #913 with 14 new sequence designations, and 1 updated designation from BA.2.38.3
- Added new lineage BK.1 from #901 with 0 new sequence designations, and 93 updated designations from BA.5.1.10
- Added new recombinant lineage XAQ from #798 with 74 new sequence designations, and 0 updated designations
- Added new recombinant lineage XAR from #860 with 49 new sequence designations, and 0 updated designations
- Duplicates resolved mostly by agreement between big tree placement and pangolin (usher mode) assignment, & manually where those disagree. Removed some sequences because they looked like mixtures or had too many reversions or run-of-bases substitutions.
- Removed 3194 sequences from an odd branch in BA.1 (reversions and/or BA.2 mutations) with multiple mini-BA.1 sub-branches implying errors in sequences and/or tree-building.
- Withdrew BA.2.36.1 from #874 and re-designated as BA.2.82
pango-designation v1.13
- Added new lineage BA.2.13.1 from #785 with 415 new sequence designations, and 25 updated designations from BA.2, and 2 updated from BA.2.13
- Added new lineage BA.2.3.19 from #824 with 23 new sequence designations, and 0 updated
- Added new lineage BA.2.36.1 from #874 with 68 new sequence designations, and 1 updated designations from BA.2
- Added new lineage BA.2.38.2 from #828 with 55 new sequence designations, and 2 updated designations from BA.2.38
- Added new lineage BA.2.81 with 303 new sequence designations and 6 updated from BA.2
- Added new lineage BA.2.9.5 with 483 new sequence designations and 44 updated from BA.2.9
- Added new lineage BA.4.1.5 with 172 new sequence designations and 39 updated from BA.4.1
- Added new lineage BA.4.1.6 with 474 new sequence designations and 56 updated from BA.4.1
- Added new lineage BA.4.1.7 with 42 new sequence designations and 5 updated from BA.4.1
- Added new lineage BA.4.1.8 from #800 with 71 new sequence designations, and 5 updated designations from BA.4.1
- Added new lineage BA.4.7 from #777 with 33 new sequence designations, and 11 updated designations from BA.4
- Added new lineage BA.5.1.5 from #835 with 173 new sequence designations, and 7 updated designations from BA.5.1
- Added new lineage BA.5.1.6 with 266 new sequence designations and 9 updated from BA.5.1
- Added new lineage BA.5.1.7 with 120 new sequence designations and 1 updated from BA.5.1
- Added new lineage BA.5.1.8 with 71 new sequence designations and 3 updated from BA.5.1
- Added new lineage BA.5.2.5 with 51 new sequence designations
- Added new lineage BA.5.6.1 with 44 new sequence designations
- Added new lineage BA.5.7 with 62 new sequence designations and 8 updated from BA.5
- Added new lineage BA.5.8 from #743 with 1048 new sequence designations, and 229 updated designations from BA.5
- Added new lineage BA.5.9 from #753 with 156 new sequence designations, and 61 updated designations from BA.5
- Added new lineage BF.10 with 1307 new sequence designations and 44 updated from BA.5.2.1
- Added new lineage BF.11 from #837 with 45 new sequence designations, and 0 updated designations
- Added new lineage BF.12 from #752 with 59 new sequence designations, and 4 updated designations from BA.5.2.1
- Added new lineage BF.3.1 from #825 with 35 new sequence designations, and 5 updated designations from BF.3
- Added new lineage BF.6 from #821 with 55 new sequence designations, and 5 updated designations from BA.5.2.1
- Added new lineage BF.7 from #827 with 59 new sequence designations, and 15 updated designations from BA.5.2.1
- Added new lineage BF.8 with 661 new sequence designations and 45 updated from BA.5.2.1
- Added new lineage BF.9 with 84 new sequence designations
- Added new lineage BG.5 from #763 with 1203 new sequence designations, and 41 updated designations from BA.2.12.1
- Added new recombinant lineage XAJ from #826 with 35 new sequence designations, and 0 updated designations
- Added new recombinant lineage XAK from #823 with 55 new sequence designations, and 0 updated designations
- Added new recombinant lineage XAL from #757 with 95 new sequence designations, and 0 updated designations
- Added new recombinant lineage XAM from #759 with 341 new sequence designations, and 3 updated designations
- Added new recombinant lineage XAN from #771 with 35 new sequence designations, and 4 updated designations
- Added new recombinant lineage XAP from #789 with 69 new sequence designations, and 0 updated designations
- Added 100 new BA.2.75 sequence designations
- Added 100 new BF.6 sequence designations
- Added 1000 new BA.2.13 sequence designations
- Added 1000 new BA.2.18 sequence designations
- Added 1000 new BA.4.6 sequence designations
- Added 1000 new BA.5.1.1 sequence designations
- Added 1000 new BA.5.3.1 sequence designations
- Added 1000 new BF.1 sequence designations
- Added 10000 new BA.5.1 sequence designations
- Added 10000 new BA.5.2 sequence designations
- Added 10000 new BA.5.2.1 sequence designations
- Added 150 new BF.3 sequence designations
- Added 200 new BA.2.43 sequence designations
- Added 200 new BA.2.74 sequence designations
- Added 200 new BA.4.1.4 sequence designations
- Added 200 new BA.4.5 sequence designations
- Added 2000 new BA.2.36 sequence designations
- Added 2000 new BA.5.6 sequence designations
- Added 2000 new BE.1 sequence designations
- Added 2000 new BE.1.1 sequence designations
- Added 20000 new BA.2.12.1 sequence designations
- Added 300 new BA.5.2.2 sequence designations
- Added 300 new BA.5.3.2 sequence designations
- Added 300 new BF.4 sequence designations
- Added 300 new BG.2 sequence designations
- Added 50 new BA.2.3.7 sequence designations
- Added 500 new BA.2.21 sequence designations
- Added 500 new BA.2.76 sequence designations
- Added 500 new BA.5.1.2 sequence designations
- Added 500 new BA.5.1.3 sequence designations
- Added 500 new BA.5.2.3 sequence designations
- Added 5000 new BA.4.1 sequence designations
- Deprecating utils/aliasing.py in favor of pango_aliasor package
pango-designation v1.12
- Added new lineage BA.2.38.1 from #809 with 33 new sequence designations and 6 updated from BA.2.38
- Added new lineage BA.2.74 from #775 with 28 new sequence designations
- Added new lineage BA.2.75 from #773 with 4 new sequence designations
- Added new lineage BA.2.76 from #787 with 170 new sequence designations, and 10 updated designations from BA.2
- Added new lineage BA.2.77 from #732 with 13 new sequence designations
- Added new lineage BA.2.78 from #814 with 104 new sequence designations and 12 updated from BA.2
- Added new lineage BA.2.79 from #812 with 113 new sequence designations and 1 updated from BA.2
- Added new lineage BA.2.79.1 from #814 with 14 sequence designations updated from BA.2.79
- Added new lineage BA.2.80 from #733 with 19 new sequence designations, and 1 updated designations from BA.2
- Added new lineage BA.4.1.3 with 31 new sequence designations and 3 updated from BA.4.1
- Added new lineage BA.4.1.4 with 51 new sequence designations and 3 updated from BA.4.1
- Added new lineage BA.4.2 with 230 new sequence designations and 47 updated from BA.4
- Added new lineage BA.4.3 with 44 new sequence designations and 9 updated from BA.4
- Added new lineage BA.4.4 with 473 new sequence designations and 79 updated from BA.4
- Added new lineage BA.4.5 with 29 new sequence designations and 5 updated from BA.4
- Added new lineage BA.4.6 from #741 with 113 new sequence designations, and 163 updated designations from BA.4
- Added new lineage BA.5.1.1 with 192 new sequence designations
- Added new lineage BA.5.1.2 from #790 with 89 new sequence designations, and 0 updated designations
- Added new lineage BA.5.1.3 from #765 with 243 new sequence designations, and 0 updated designations
- Added new lineage BA.5.1.4 from #801 with 92 new sequence designations, and 24 updated designations from BA.5.1
- Added new lineage BA.5.2.2 with 82 new sequence designations and 9 updated from BA.5.2
- Added new lineage BA.5.2.3 with 94 new sequence designations and 1 updated from BA.5.2
- Added new lineage BA.5.2.4 with 9 new designations and 11 updated from BA.5.2
- Added new lineage BA.5.3.3 with 147 new sequence designations
- Added new lineage BA.5.3.4 with 143 new sequence designations and 9 updated from BA.5.3
- Added new lineage BA.5.6 with 393 new sequence designations and 37 updated from BA.5
- Added new lineage BE.1.1 with 956 new sequence designations
- Added new lineage BE.2 with 37 new sequence designations and 12 updated from BA.5.3.1
- Added new lineage BE.3 with 220 new designations and 207 updated from BA.5.3.1
- Added new lineage BF.1.1 with 114 new sequence designations and 8 updated from BF.1
- Added new lineage BF.2 with 133 new sequence designations and 5 updated from BA.5.2.1
- Added new lineage BF.3 with 38 new sequence designations and 5 updated from BA.5.2.1
- Added new lineage BF.4 from #788 with 80 new sequence designations, and 2 updated designations from BA.5.2.1
- Added new lineage BF.5 with 986 new designations and 344 updated from BA.5.2.1
- Added new lineage BG.3 from #784 with 28 new sequence designations, and 1 updated designations from BA.2.12.1
- Added new lineage BG.4 with 102 new sequence designations and 9 updated from BA.2.12.1
- Added 1000 new BA.2.38 sequence designations
- Added 1000 new BA.5 sequence designations
- Added 2000 new BA.5.2 sequence designations
- Added 2000 new BA.5.2.1 sequence designations
- Added 2000 new BA.5.5 sequence designations
- Added 300 new BA.4.1.1 sequence designations
- Added 3000 new BA.4.1 sequence designations
- Added 3000 new BA.5.1 sequence designations
- Added 38 new BA.2.75 sequence designations
- Added 400 new BA.2.40.1 sequence designations
- Added 400 new BA.2.42 sequence designations
- Added 400 new BA.5.3 sequence designations
- Added 4000 new BA.4 sequence designations
- Added 40000 new BA.1.1 sequence designations
- Added 40000 new BA.2 sequence designations
- Added 500 new BA.5.3.1 sequence designations
pango-designation v1.11
- Added new lineage BG.2 from #767 with 44 new sequence designations, and 7 updated designations from BA.2.12.1
- Added 124 new BA.5.2 sequence designations
- Updated alias_key.json to include XAH
- Added description for B.1.190 to lineage_notes.txt
pango-designation v1.10
- Added new lineage AY.98.1.1 from #604 with 558 new sequence designations, and 11 updated designation from AY.98.1
- Added new lineage BA.1.15.3 from #573 with 104 new sequence designations and 53 updated from BA.1.15
- Added new lineage BA.1.23 from #663 with 8 new sequence designations, and 1 updated designations from BA.1
- Added new lineage BA.1.24 from #666 with 6 new sequence designations, and 0 updated designations
- Added new lineage BA.2.10.3 from #609 with 21 new sequence designations, and 34 updated designation from BA.2.10
- Added new lineage BA.2.12.2 from #686 with 220 new sequence designations, and 216 updated designations from BA.2.12
- Added new lineage BA.2.2.1 from #675 with 9 new sequence designations and 12 updated from BA.2.2
- Added new lineage BA.2.3.10 with 421 new sequence designations and 204 updated from BA.2.3
- Added new lineage BA.2.3.11 with 737 new sequence designations and 258 updated from BA.2.3
- Added new lineage BA.2.3.12 with 1544 new sequence designations and 531 updated from BA.2.3
- Added new lineage BA.2.3.12 with 656 new sequence designations and 51 updated from BA.2.3
- Added new lineage BA.2.3.14 with 556 new sequence designations and 52 updated from BA.2.3
- Added new lineage BA.2.3.15 with 622 new sequence designations and 329 updated from BA.2.3
- Added new lineage BA.2.3.16 from #524 with 90 new sequence designations and 1 updated from BA.2.3
- Added new lineage BA.2.3.17 from #677 with 795 new sequence designations and 420 updated from BA.2.3
- Added new lineage BA.2.3.18 from #687 with 131 new sequence designations and 30 updated from BA.2.3
- Added new lineage BA.2.3.5 from #627 with 144 new sequence designations, and 55 updated designations from BA.2.3
- Added new lineage BA.2.3.6 from #633 with 536 new sequence designations, and 108 updated designations from BA.2.3
- Added new lineage BA.2.3.7 from #643 with 20 new sequence designations, and 0 updated designations
- Added new lineage BA.2.3.8 with 141 new sequence designations and 7 updated from BA.2.3
- Added new lineage BA.2.3.9 with 211 new sequence designations and 121 updated from BA.2.3
- Added new lineage BA.2.42 from #610 with 72 new sequence designations, and 3 updated designation from BA.2
- Added new lineage BA.2.43 from #612 with 25 new sequence designations, and 0 updated designations
- Added new lineage BA.2.44 from #613 with 139 new sequence designations, and 10 updated designations from BA.2
- Added new lineage BA.2.45 from #616 with 405 new sequence designations, and 33 updated designations from BA.2
- Added new lineage BA.2.46 from #626 with 111 new sequence designations, and 6 updated designations from BA.2
- Added new lineage BA.2.47 from #631 with 803 new sequence designations, and 45 updated designations from BA.2
- Added new lineage BA.2.48 from #634 with 676 new sequence designations, and 16 updated designations from BA.2
- Added new lineage BA.2.49 from #640 with 630 new sequence designations, and 40 updated designations from BA.2
- Added new lineage BA.2.50 from #641 with 514 new sequence designations, and 34 updated designations from BA.2
- Added new lineage BA.2.51 from #644 with 288 new sequence designations, and 22 updated designations from BA.2
- Added new lineage BA.2.52 from #648 with 239 new sequence designations, and 1 updated designations from BA.2
- Added new lineage BA.2.53 from #651 with 142 new sequence designations, and 3 updated designations from BA.2
- Added new lineage BA.2.54 from #658 with 135 new sequence designations, and 1 updated designations from BA.2
- Added new lineage BA.2.55 from #660 with 110 new sequence designations, and 5 updated designations from BA.2
- Added new lineage BA.2.56 from #668 with 487 new sequence designations, and 9 updated designations from BA.2
- Added new lineage BA.2.56.1 from #745 with 30 new sequence designations
- Added new lineage BA.2.57 with 282 new sequence designations and 32 updated from BA.2
- Added new lineage BA.2.58 with 108 new sequence designations and 4 updated from BA.2
- Added new lineage BA.2.59 from #672 with 198 new sequence designations, and 8 updated designations from BA.2
- Added new lineage BA.2.60 with 84 new sequence designations and 4 updated from BA.2
- Added new lineage BA.2.61 with 66 new sequence designations
- Added new lineage BA.2.62 with 255 new sequence designations and 13 updated from BA.2
- Added new lineage BA.2.63 with 126 new sequence designations and 2 updated from BA.2
- Added new lineage BA.2.64 with 377 new sequence designations and 36 updated from BA.2
- Added new lineage BA.2.65 with 1928 new sequence designations and 95 updated from BA.2
- Added new lineage BA.2.66 with 254 new sequence designations and 30 updated from BA.2
- Added new lineage BA.2.67 with 225 new sequence designations and 31 updated from BA.2
- Added new lineage BA.2.68 with 700 new sequence designations and 11 updated from BA.2
- Added new lineage BA.2.69 with 68 new sequence designations and 1 updated from BA.2
- Added new lineage BA.2.70 with 188 new sequence designations and 7 updated from BA.2
- Added new lineage BA.2.71 from #695 with 72 new sequence designations, and 5 updated designations from BA.2
- Added new lineage BA.2.72 from #698 with 323 new sequence designations, and 20 updated designations from BA.2
- Added new lineage BA.2.73 from #632 with 185 new sequence designations and 4 updated from BA.2
- Added new lineage BA.2.9.3 from #630 with 609 new sequence designations, and 124 updated designations from BA.2.9
- Added new lineage BA.2.9.4 from #635 with 230 new sequence designations, and 34 updated designations from BA.2.9
- Added new lineage BA.4.1 from #548 with 140 new sequence designations, and 12 updated designations from BA.4
- Added new lineage BA.4.1.1 from #667 with 34 new sequence designations, and 15 updated designations from BA.4.1
- Added new lineage BA.4.1.2 with 24 new sequence designations and 67 updated from BA.4.1
- Added new lineage BA.5.2 from #551 with 3 new sequence designations, and 62 updated designations from BA.5
- Added new lineage BA.5.2.1 from #657 with 201 new sequence designations, and 94 updated designations from BA.5.4, and 31 from BA.5.2
- Added new lineage BA.5.3 from #550 with 8 new sequence designations, and 122 updated designations from BA.5
- Added new lineage BA.5.3.1 from #625 with 63 new sequence designations, and 19 updated designations from BA.5.3
- Added new lineage BA.5.3.2 from #697 with 117 new sequence designations, and 21 updated designations from BA.5.3
- Added new lineage BA.5.4 from #618 with 64 new sequence designations, and 31 updated designations from BA.5.2
- Added new lineage BA.5.5 from #656 with 137 new sequence designations, and 8 updated designations from BA.5
- Added new lineage BC.2 from #570 with 77 new sequence designations and 19 updated from BA.1.1.1
- Added new lineage BD.1 with 3471 new sequence designations and 933 updated from BA.1.17.2
- Added new lineage BD.1 with 3471 new sequence designations and 933 updated from BA.1.17.2
- Added new lineage BE.1 from #625 with 0 new sequence designations, and 55 updated designations from BA.5.3.1
- Added new lineage BF.1 from #618 with 1 new sequence designations, and 94 updated designations from BA.5.2.1
- Added new lineage BG.1 from #679 with 28 new sequence designations and 9 updated from BA.2.12.1
- Added new lineage XAD from #607 with 39 new sequence designations and 3 updated from BA.2
- Added new lineage XAE from #637 with 59 new sequence designations and 1 updated from BA.2
- Added new lineage XAF from #676 with 71 new sequence designations
- Added new lineage XAG from #709 with 47 new sequence designations
- Added new lineage XAH from #755 with 56 new sequence designations and 2 updated from BA.2
- Added new recombinant lineage XAA from #664 with 49 new sequence designations, and 0 updated designations
- Added new recombinant lineage XAB from #665 with 81 new sequence designations, and 0 updated designations
- Added new recombinant lineage XAC from #590 with 126 new sequence designations, and 3 updated designations
- Added new recombinant lineage XY from #606 with 36 new sequence designations, and 0 updated designations
- Added new recombinant lineage XZ from #636 with 61 new sequence designations, and 0 updated designations
- Added 1000 new BA.2.3.1 sequence designations
- Added 10000 new BA.1 sequence designations
- Added 10000 new BA.1.1 sequence designations
- Added 10000 new BA.1.1.1 sequence designations
- Added 10000 new BA.1.1.2 sequence designations
- Added 10000 new BA.2 sequence designations
- Added 10000 new BA.2.12.1 sequence designations
- Added 10000 new BA.2.3 sequence designations
- Added 101 new BA.2.3.16 sequence designations, 76 new and 25 updated from BA.2.3
- Added 150 new BA.5 sequence designations
- Added 16 new BA.2.12.1 sequence designations close to BG.1
- Added 200 new BA.2.10.2 sequence designations
- Added 50 new BA.2.35 sequence designations
- Added 500 new BA.2.24 sequence designations
- Added 500 new BA.2.29 sequence designations
- Added 500 new BA.2.3.2 sequence designations
- Added 500 new BA.4 sequence designations
- Added 500 new BA.4.1 sequence designations
- Readded lineage BC.1 with 5781 new sequence designations
- Removed 12 sequence designations
- Removed 282 sequence designations with duplicate sequence names in multiple lineages
- Updated 14 designations from B.1 sublineages to B.1 and removed 81 designations from B.1 sublineages
- Updated 8 sequence designations that cluster in a different lineage with the defining mutation