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29 Open 26 Closed
29 Open 26 Closed
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Issues list

Snakemake standardized usage
#151 opened Mar 6, 2024 by uniqueg
2 of 3 tasks
1
Problem in the deconvolution step
#148 opened Jan 8, 2024 by Xuyen21
@DrYak
4
Activating snv in sars tutorial leads to error
#146 opened Jun 13, 2023 by schlaepferp
@DrYak
2
Missing input files for rule generate_web_visualization
#139 opened Mar 8, 2023 by carlottaolivero
Error in rule hmm_align: HIV in Vpipe
#138 opened Feb 2, 2023 by vfdiamante
2
hiv-tutorial fails with haplotype_reconstruction: savage, and SAVAGE command output is dumped into terminal instead of log
#137 opened Nov 18, 2022 by Masterxilo
hiv-tutorial works with haploclique, but fails with predicthaplo
#136 opened Nov 18, 2022 by Masterxilo
[UX issue] multiple GFF
#134 opened Nov 4, 2022 by DrYak
1
[UX issue] unknown keywords in config file
#133 opened Nov 4, 2022 by DrYak
1
Warning: All reads at position 4045 in the same reverse orientation ?
#126 opened Mar 16, 2022 by Vinoy-UKHSA
@spaceben @LaraFuhrmann
1
SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly
#124 opened Mar 7, 2022 by thomasbtf
@kpj @DrYak
1
please document haploclique.extra_parameters
#122 opened Feb 4, 2022 by Masterxilo
3
Getting snake error
#120 opened Jan 22, 2022 by dstcr
23
Running with tutorial dataset giving all empty file
#119 opened Jan 21, 2022 by wasimbt
6
The order of jobs does not reflect the order of execution. Any help?
#107 opened Oct 5, 2021 by carlottaolivero
1
Haplotype percentage or frequency estimation
#101 opened Aug 12, 2021 by poursalavati
Warning: cannot detect conda environment
#100 opened Jun 18, 2021 by med-ss20
@DrYak
4
shorah output in vcf for all samples
#96 opened May 14, 2021 by ibseq
@DrYak
2
error for assigning config file by snakemake option
#89 opened Mar 31, 2021 by vicfabienne
@DrYak
3
posterior values using lofreq rule?
#88 opened Mar 31, 2021 by vicfabienne
2
shorah sampling status
#87 opened Mar 15, 2021 by snaketron
1
threading question
#85 opened Mar 5, 2021 by rsettlage
@kpj @DrYak
7
Primers trimming enhancement
#82 opened Feb 17, 2021 by chadisaad
@DrYak @LaraFuhrmann
1
./vpipe --dryrun error
#80 opened Feb 10, 2021 by ibseq
11
got stuck in this rule convert_to_ref, convert_reference did not work
#70 opened Oct 29, 2020 by Jamesped
@DrYak
2
ProTip! Exclude everything labeled bug with -label:bug.