shorah output in vcf for all samples

[ibseq]

hi all
how can we convert the minority_variants.tsv in vcf or merge each of the single vcf into one? (they all have same naming)

thanks
ibseq

[DrYak]

Please note that the minority_variants.tsv is only a list of variantions found in the alignment, not a proper variant call. (There is no scoring / filtering applied).
Unlike the VCFs which are produced by ShoRAH or LoFreq, and use their respective.

[DrYak]

The VCF files generated by ShoRAH and LoFreq should be manipulable with standard tools such as VCFtools.