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V-pipe is a bioinformatics pipeline that integrates various computational tools for the analysis of viral high-throughput sequencing data.

Warning: the documentation on this wiki is deprecated and refers to V-pipe versions 1.0 and 2.0 (published in Bioinformatics). You can find the most recent documentation for V-pipe 3.0 in the readme on the master branch.

In this wiki you find further details on (1) how to install dependencies and run the pipeline, (2) how to configure the pipeline for customized runs, (3) how to use V-pipe as a benchmark tool, and (4) what types of output files are generated by V-pipe.