Skip to content

Issues: benjjneb/dada2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

506 Open 1,394 Closed
506 Open 1,394 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

derep
#1954 opened May 11, 2024 by tobaiasbama
Trimming/ derep error
#1953 opened May 11, 2024 by tobaiasbama
Is denoising required for kraken analysis?
#1952 opened May 10, 2024 by BrinthaVP
Suspiciously high number of low-abundance ASVs (10s of 1000s)?
#1951 opened May 10, 2024 by SJohnsonMayo
Cluster ASVs to OTUs with DECIPHER
#1950 opened May 9, 2024 by Danyang1111
cutadapt: error: cutadapt not able to trim the desired adaptor
#1949 opened May 9, 2024 by faizee-ali
2
quality filter: imbalance forward vs reverse reads - dada2-
#1948 opened May 7, 2024 by valengirardi
2
Increasing number of nonchimeric reads compared to the number of input reads
#1947 opened May 6, 2024 by Abdelrahim-maker
1
Solving the "Error: BiocParallel errors" (in almost every sample)
#1946 opened May 3, 2024 by Yoonseopark02
3
Clustering dada2-obtained ASVs into OTUs with DECIPHER
#1944 opened May 2, 2024 by ConstanceBtd
6
dada2 reference database for eukaryotes
#1943 opened May 2, 2024 by eunicetan
1
Differences in chimera detection based on dataset structure
#1942 opened May 1, 2024 by seoldh
2
error: no input files found from Assign taxonomy
#1941 opened Apr 29, 2024 by bylee613
5
BiocParallel error
#1940 opened Apr 29, 2024 by ThibauldMichel
3
Number of ASVs changes on different computers/R versions?
#1939 opened Apr 28, 2024 by vmsur
4
Taxonomy assignment
#1938 opened Apr 26, 2024 by SRC151
4
Non-fitting Error Plots
#1937 opened Apr 25, 2024 by SophMN
4
Quality plot profile refence for filterAndTrim truncLen values
#1936 opened Apr 25, 2024 by luigallucci
4
Drop in Qualityscore in the middle of the reads
#1935 opened Apr 25, 2024 by MadsBjornsen
6
Missing reads when transitioning from Dada2 to phyloseq
#1933 opened Apr 23, 2024 by GingerMATE
3
Memory error in AssignTaxonomy when working with very small sequences bug
#1932 opened Apr 22, 2024 by nearinj
1
garbled fastq files after Filter and trim
#1930 opened Apr 15, 2024 by Danyang1111
1
Problem trimming primers
#1929 opened Apr 12, 2024 by Gian77
2
Loosing reads after merging
#1928 opened Apr 12, 2024 by hellewiedunkle
5
Fecal samples not the same results and error msg when learning errors
#1927 opened Apr 12, 2024 by FlorianRocher
2
ProTip! What’s not been updated in a month: updated:<2024-04-11.