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Increasing number of nonchimeric reads compared to the number of input reads #1947

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Abdelrahim-maker opened this issue May 6, 2024 · 1 comment

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@Abdelrahim-maker
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Hi everyone

I was using dada2 in R on my arbuscular mycorrhizal fungi reads and I noticed that after truncating them, I got an increased number of nonchimeric reads compared to the input I had. for example my input for one of the samples was 666 reads and the nonchim is 47,000. another sample has an input of 8 and nonchim which is 49 reads. How is that possible?

Thanks

@benjjneb
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benjjneb commented May 7, 2024

It's not possible. How are you arriving at this result?

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