unpin bioperl in prokka module

bactopia · Apr 7, 2024 · f0f3b32 · f0f3b32
1 parent a7e2c15
commit f0f3b32
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/modules/nf-core/prokka/main.nf b/modules/nf-core/prokka/main.nf
@@ -2,7 +2,7 @@
 include { initOptions; saveFiles } from '../../../lib/nf/functions'
 options       = initOptions(params.containsKey("options") ? params.options : [:], 'prokka')
 options.btype = options.btype ?: "main"
-conda_tools   = "bioconda::prokka=1.14.6 bioconda::perl-bioperl=1.7.2"
+conda_tools   = "bioconda::prokka=1.14.6"
 conda_name    = conda_tools.replace("=", "-").replace(":", "-").replace(" ", "-")
 conda_env     = file("${params.condadir}/${conda_name}").exists() ? "${params.condadir}/${conda_name}" : conda_tools
 
@@ -12,8 +12,8 @@ process PROKKA {
 
     conda (params.enable_conda ? conda_env : null)
     container "${ workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/prokka:1.14.6--pl526_0' :
-        'quay.io/biocontainers/prokka:1.14.6--pl526_0' }"
+        'https://depot.galaxyproject.org/singularity/prokka:1.14.6--pl5321hdfd78af_5' :
+        'quay.io/biocontainers/prokka:1.14.6--pl5321hdfd78af_5' }"
 
     input:
     tuple val(meta), path(fasta)