update all tests action

bactopia · Mar 23, 2024 · 658edf7 · 658edf7
1 parent c12e2fc
commit 658edf7
Showing 1 changed file with 4 additions and 7 deletions.
diff --git a/.github/workflows/all-bactopia-tests.yml b/.github/workflows/all-bactopia-tests.yml
@@ -1,9 +1,6 @@
 name: All Bactopia Tests
 
 on: workflow_dispatch
-  #schedule:
-    # At 01:30 on Monday and Thursday
-    #- cron:  '30 1 * * 1,4'
 
 jobs:
   bactopia-tests:
@@ -14,7 +11,7 @@ jobs:
 
     steps:
       - name: Checkout bactopia/bactopia
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
         with:
           path: ${{ github.run_id }}/bactopia
 
@@ -30,7 +27,7 @@ jobs:
 
       - name: Conda Profile
         run: |
-          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
@@ -39,7 +36,7 @@ jobs:
 
       - name: Docker Profile
         run: |
-          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
@@ -48,7 +45,7 @@ jobs:
 
       - name: Singularity Profile
         run: |
-          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/miniforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls modules/local/bactopia | xargs -I {} -P 10 -n 1\