add params for teton

CHANGELOG.md

@@ -25,9 +25,11 @@ description: A full list of Bactopia releases and a description of the changes.
 
 ### `Fixed`
 
-- missing schema for clean-yer-reads
+- missing schema for clean-yer-reads and teton
 - use `--infile-list` with `csvtk concat` to support 10k+ inputs
 - `pangenome` when Bakta GFF (`*.gff3`) files are provided
+- missing file export in `gubbins`
+
 
 ### `Enhancements to OSS`
 

CODE_OF_CONDUCT.md

@@ -55,11 +55,11 @@ further defined and clarified by project maintainers.
 ## Enforcement
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
-reported by contacting the project team at robert.petit@emory.edu (Robert Petit) 
-or tdread@emory.edu (Tim Read). All complaints will be reviewed and investigated 
-and will result in a response that is deemed necessary and appropriate to the 
-circumstances. The project team is obligated to maintain confidentiality with 
-regard to the reporter of an incident. Further details of specific enforcement 
+reported by contacting the project team at robbie.petit@gmail.com (Robert Petit)
+or tdread@emory.edu (Tim Read). All complaints will be reviewed and investigated
+and will result in a response that is deemed necessary and appropriate to the
+circumstances. The project team is obligated to maintain confidentiality with
+regard to the reporter of an incident. Further details of specific enforcement
 policies may be posted separately.
 
 Project maintainers who do not follow or enforce the Code of Conduct in good

modules/nf-core/srahumanscrubber/scrub/params-teton.json

@@ -0,0 +1,29 @@
+{
+    "$schema": "http://json-schema.org/draft-07/schema",
+    "$id": "https://raw.githubusercontent.com/bactopia/bactopia/master/modules/nf-core/srahumanscrubber/scrub/params.json",
+    "title": "sra-human-scrubber Module",
+    "description": "A module detecting and removing human reads from FASTQs",
+    "type": "object",
+    "definitions": {
+        "srahumanscrubber_scrub_parameters": {
+            "title": "Scrubber (sra-human-scrubber) Parameters",
+            "type": "object",
+            "description": "",
+            "default": "",
+            "fa_icon": "fas fa-exclamation-circle",
+            "properties": {
+                "use_srascrubber": {
+                    "type": "boolean",
+                    "default": false,
+                    "description": "Use SRAHumanScrubber for scrubbing human reads",
+                    "fa_icon": "fas fa-file-alt"
+                }
+            }
+        }
+    },
+    "allOf": [
+        {
+            "$ref": "#/definitions/srahumanscrubber_scrub_parameters"
+        }
+    ]
+}