Reproducibility-FBB-MSU
Popular repositories
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Ab-Initio-Protein-Structure-Prediction
Ab-Initio-Protein-Structure-Prediction PublicUsing materials and methods of the article "Ab initio protein structure prediction of CASP III targets using ROSETTA" written by Kim T. Simons, Rich Bonneau, Ingo Ruczinski and David Baker, we cond…
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CAMISIM_reproducibility
CAMISIM_reproducibility PublicTo reproduce some results from "CAMISIM: simulating metagenomes and microbial communities". Authors: Simon Konnov, Ciara Makievskaya, Ruslan Gumerov
Jupyter Notebook 1
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instructions
instructions PublicThis repo contains instructions for the students about git usage and projects update.
Repositories
- CAMISIM_reproducibility Public
To reproduce some results from "CAMISIM: simulating metagenomes and microbial communities". Authors: Simon Konnov, Ciara Makievskaya, Ruslan Gumerov
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- GOATOOLS_repr Public
Воспроизведение некоторых результатов из статьи про GOATOOLS: A Python library for Gene Ontology analyses (DOI:10.1038/s41598-018-28948-z)
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- codon_bias Public
- Ab-Initio-Protein-Structure-Prediction Public
Using materials and methods of the article "Ab initio protein structure prediction of CASP III targets using ROSETTA" written by Kim T. Simons, Rich Bonneau, Ingo Ruczinski and David Baker, we conducted ab initio folding to generate structures consistent with both the local and nonlocal interactions responsible for protein stability. To generate…
- Convolutional-neural-networks_ncRNA Public
To reproduce some results from "Convolutional neural networks for classification of alignments of non-coding RNA sequences"
- treeWAS Public
Test of treeWAS tool described in the paper "A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination" (Caitlin Collins, Xavier Didelot, 2018, PLOS Computational Biology).
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