Skip to content

Issues: MouseLand/cellpose

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

59 Open 741 Closed
59 Open 741 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[FEATURE] - better documentation of and/or integration for use with training-run-tracking tools enhancement New feature or request
#927 opened Apr 29, 2024 by bethac07
[INSTALL] Could not load the Qt platform plugin "xcb" in "" even though it was found. install install help
#926 opened Apr 28, 2024 by brchn6
[BUG] After training model with cellpose 3 the diameter is reset to 30 bug Something isn't working
#925 opened Apr 27, 2024 by MARGINMB
Training argument --save_each not working using Cellpose 3 bug Something isn't working
#924 opened Apr 25, 2024 by dfgdgdfgd
[INSTALL]How to call the model trained by GUI on my own data set in code？ install install help
#923 opened Apr 23, 2024 by Gh19950825
[BUG] Model zoo (cyto2) not available in cellpose GUI bug Something isn't working
#922 opened Apr 22, 2024 by iamlll
[BUG] Memory Leak maybe? bug Something isn't working
#921 opened Apr 19, 2024 by mayishazn
[BUG] Cellpose 3.0.7 does not remember that turning off auto-adjust saturation during image training bug Something isn't working
#920 opened Apr 18, 2024 by leon11345e
[BUG] DenoiseModel and CellposeDenoiseModel returning image flattened across one axis bug Something isn't working
#919 opened Apr 18, 2024 by natelharrison
Cellpose 3 runs out of GPU memory where Cellpose 2 didn't bug Something isn't working
#918 opened Apr 17, 2024 by yassinharim
cellpose on large .tif images (1GB-10GB)
#917 opened Apr 16, 2024 by Nespresso2000
[FEATURE] a separate quantification algorithm or ability to input a single x-y coordinate as the position of a cell (instead of a mask) enhancement New feature or request
#915 opened Apr 11, 2024 by tanpancodes
@mrariden
3
Allow for cell and nucleus detection enhancement New feature or request
#914 opened Apr 11, 2024 by lacan
ValueError when exporting masks to ImageJ ROIs [BUG] bug Something isn't working
#913 opened Apr 10, 2024 by LenaGschossmann
How to specify device on A100 that is MIGed[INSTALL] install install help
#909 opened Apr 5, 2024 by derekthirstrup
1
Error in starting GUI Interface for Cellpose bug Something isn't working
#907 opened Apr 4, 2024 by Shrishtee-kandoi
1
[BUG] bug Something isn't working
#905 opened Mar 29, 2024 by jinshachen
3
io.masks_flows_to_seg errors silently without saving seg npy file [BUG]
#904 opened Mar 28, 2024 by davidhbrann
2
AttributeError during training [BUG] bug Something isn't working
#903 opened Mar 28, 2024 by redrodion
AttributeError: 'CellposeModel' object has no attribute 'diam_labels'[BUG] bug Something isn't working
#901 opened Mar 26, 2024 by VerbeekM
1
[BUG] finetuned nuclei model has a model diam_mean of 30 instead of 17 bug Something isn't working
#900 opened Mar 26, 2024 by PolarBean
1
GPU not being used by Cellpose install install help
#899 opened Mar 26, 2024 by ismaelfhz
2
Using --no_norm with CLI slows down 3D segmentation[BUG] bug Something isn't working
#898 opened Mar 22, 2024 by derekthirstrup
[INSTALL] pip upgrade form cellpose 2 to cellpose 3 results in segmentation fault install install help
#895 opened Mar 19, 2024 by amichaut
Save Files as *.npy output from Jupyter Notebook not generated bug Something isn't working
#894 opened Mar 18, 2024 by JT-24
3
ProTip! Follow long discussions with comments:>50.