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Using --no_norm with CLI slows down 3D segmentation[BUG] #898

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derekthirstrup opened this issue Mar 22, 2024 · 0 comments
Open

Using --no_norm with CLI slows down 3D segmentation[BUG] #898

derekthirstrup opened this issue Mar 22, 2024 · 0 comments
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@derekthirstrup
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The segmentation of 3d tif stacks is taking 5-6 minutes to process 1 image when --no_norm is used. When the same stacks are processed without --no_norm argument then it takes roughly 20 seconds. I previously denoised and rescaled the images so they do not need to be rescaled again during segmentation. Any ideas why it takes significantly more time with --no_norm option? Seems like it should be faster.

@derekthirstrup derekthirstrup added the bug Something isn't working label Mar 22, 2024
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