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Allow for cell and nucleus detection #914

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lacan opened this issue Apr 11, 2024 · 0 comments
Open

Allow for cell and nucleus detection #914

lacan opened this issue Apr 11, 2024 · 0 comments
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enhancement New feature or request

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@lacan
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lacan commented Apr 11, 2024

It often happens that people are interested in obtaining cell outlines plus nuclei in order to obtain compartment-based measurements

Describe the solution you'd like
Considering cellpose just added a new series of models for denoising that can be "overlapped", would it be possible to do the same for obtaining both the cell outline and the nuleir outline on the same cellpose run?

Describe alternatives you've considered
We currently run cellpose twice to detect both compartments, then do a bit of morphology to associate them with one another, but having this built in could be great!

@lacan lacan added the enhancement New feature or request label Apr 11, 2024
@lacan lacan changed the title [FEATURE] Allow for cell and nucleus detection Apr 11, 2024
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