Missing slash in manifest.qc.csv

[clairedubin]

When running preprocess.nf on the anndata branch, with a results directory specified:

nextflow run ~/src/geneshot_anndata/modules/preprocess.nf --manifest manifest.csv --host_index hg_index.tar.gz --output results

The output post-qc manifest is missing a slash between the results directory and "qc":

specimen,R1,R2
sample_name,./resultsqc/sample_1__R1.noadapt.nohuman.fq.gz,./resultsqc/sample_2__R2.noadapt.nohuman.fq.gz

I think this can be fixed by changing line 313 here from:

return csvStr += "${row[0]},${params.output}qc/${row[1].name},${params.output}qc/${row[2].name}\n";

to:
return csvStr += "${row[0]},${params.output_folder}qc/${row[1].name},${params.output_folder}qc/${row[2].name}\n";

since params.output_folder always includes a trailing /