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25 Open 343 Closed
25 Open 343 Closed
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Issues list

For a specific bin, why is the Marker lineage in lineage.ms different with it in quality report?
#394 opened Mar 31, 2024 by liuyun313
No space left on device error in HMM step not caught
#393 opened Mar 28, 2024 by boasvdp
1
Unexpected error: <class 'FileNotFoundError'>
#391 opened Mar 21, 2024 by zzzzzoeyy
Having trouble interpreting the meaning of "root" as a marker lineage
#388 opened Feb 1, 2024 by jackieway
1
NameError: free variable 'mask' referenced before assignment in enclosing scope
#387 opened Jan 31, 2024 by kstagaman
checkm_coverage dropped some bins
#386 opened Jan 24, 2024 by emilyjunkins
checkm ssu_finder
#384 opened Jan 10, 2024 by mehmetdayi
2
Chekm test: line 1: 16491 Bus error (core dumped) pplacer -j 1
#379 opened Sep 11, 2023 by 98jay
1
FileNotFoundError: [Errno 2] No such file or directory: '/home/majorram/anaconda3/envs/checkm/hmms/phylo.hmm'
#378 opened Aug 2, 2023 by ramnageena11
2
Unexpected error: <class 'KeyError'>
#377 opened Jul 12, 2023 by gracedai23
ERROR conda.core.link:_execute(952): An error occurred while installing package 'bioconda::checkm-genome-1.2.2-pyhdfd78af_1'.
#375 opened Jun 8, 2023 by RoyaRahmani
1
IndexError: list index out of range
#373 opened May 22, 2023 by sandipandrils
1
FileNotFoundError: [Errno 2] No such file or directory: 'checkm_folder/storage/tree/concatenated.tre'
#372 opened Apr 28, 2023 by spitfiredd
8
Reference data is missing
#370 opened Mar 22, 2023 by tiagocabralborelli
1
Customizing CheckM Dataset & Gene Marker Selection for a Species
#369 opened Mar 21, 2023 by Leytoncito
bin_qa_plot
#368 opened Jan 30, 2023 by Anna-pro
Unexpected error: <class 'RecursionError'>
#365 opened Dec 25, 2022 by MingyueCheng
2
Is there a possibility to have the distance between the putative genome and the closest reference genome?
#363 opened Dec 20, 2022 by dgrissa
1
checkm coverage issue
#361 opened Nov 28, 2022 by confusedWXX
Are bin_compare and bin_qa_plot functions still working?
#359 opened Nov 17, 2022 by snehamurthy21
4
ssu_finder
#358 opened Nov 17, 2022 by joao1980
1
The effect of non-prokaryotes sequence
#355 opened Nov 1, 2022 by neptuneyt
2
CheckM installation fails due to "incompatible with your system: - feature:/linux-64::__glibc==2.28=0"
#350 opened Aug 31, 2022 by annaedlund
4
SafetyError: The package for checkm-genome located at [anaconda3_path]/pkgs/checkm-genome-1.1.3-py_1 appears to be corrupted. The path 'site-packages/checkm/DATA_CONFIG'
#349 opened Aug 30, 2022 by jolespin
2
Different results between lineage_wf runs
#348 opened Aug 12, 2022 by cifuj
1
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