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ERROR conda.core.link:_execute(952): An error occurred while installing package 'bioconda::checkm-genome-1.2.2-pyhdfd78af_1'. #375

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RoyaRahmani opened this issue Jun 8, 2023 · 1 comment

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@RoyaRahmani
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Hi I am trying to install CheckM-Genome from Bioconda on ubunro 22.04.
I encountered an issue while trying.
It seems like the file "checkm_data_2015_01_16.tar.gz" in address [ https://zenodo.org/record/7401545/files/checkm_data_2015_01_16.tar.gz ] is not available any more.
I would like to know how I can resolve this issue and proceed with the proper installation of CheckM on my system.
Thanks.

@RoyaRahmani
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RoyaRahmani commented Jun 10, 2023

The environment's packages are:
conda list -n checkm
packages in environment at /home/roya/anaconda3/envs/checkm:

Name Version Build Channel
_libgcc_mutex 0.1 main
_openmp_mutex 5.1 1_gnu
blas 1.0 mkl
brotli 1.0.9 h5eee18b_7
brotli-bin 1.0.9 h5eee18b_7
bzip2 1.0.8 h7b6447c_0
ca-certificates 2023.01.10 h06a4308_0
certifi 2022.12.7 py37h06a4308_0
curl 7.71.1 h8f29fe8_2
cycler 0.11.0 pyhd3eb1b0_0
dbus 1.13.18 hb2f20db_0
expat 2.4.9 h6a678d5_0
fontconfig 2.14.1 h4c34cd2_2
fonttools 4.25.0 pyhd3eb1b0_0
freetype 2.12.1 h4a9f257_0
giflib 5.2.1 h5eee18b_3
glib 2.69.1 he621ea3_2
gst-plugins-base 1.14.1 h6a678d5_1
gstreamer 1.14.1 h5eee18b_1
hmmer 3.3.2 h87f3376_2 bioconda
icu 58.2 he6710b0_3
intel-openmp 2021.4.0 h06a4308_3561
jpeg 9e h5eee18b_1
kiwisolver 1.3.2 py37h295c915_0
krb5 1.19.4 h568e23c_0
lcms2 2.12 h3be6417_0
ld_impl_linux-64 2.38 h1181459_1
libbrotlicommon 1.0.9 h5eee18b_7
libbrotlidec 1.0.9 h5eee18b_7
libbrotlienc 1.0.9 h5eee18b_7
libclang 14.0.6 default_hc6dbbc7_1
libclang13 14.0.6 default_he11475f_1
libcurl 7.71.1 h303737a_2
libdeflate 1.0 h14c3975_1 bioconda
libedit 3.1.20221030 h5eee18b_0
libevent 2.1.12 h8f2d780_0
libffi 3.4.4 h6a678d5_0
libgcc-ng 11.2.0 h1234567_1
libgomp 11.2.0 h1234567_1
libllvm14 14.0.6 hdb19cb5_3
libpng 1.6.39 h5eee18b_0
libpq 12.9 h16c4e8d_3
libssh2 1.10.0 h8f2d780_0
libstdcxx-ng 11.2.0 h1234567_1
libtiff 4.2.0 hecacb30_2
libuuid 1.41.5 h5eee18b_0
libwebp 1.2.4 h11a3e52_1
libwebp-base 1.2.4 h5eee18b_1
libxcb 1.15 h7f8727e_0
libxkbcommon 1.0.1 h5eee18b_1
libxml2 2.10.3 hcbfbd50_0
libxslt 1.1.37 h2085143_0
lz4-c 1.9.4 h6a678d5_0
matplotlib 3.5.3 py37h06a4308_0
matplotlib-base 3.5.3 py37hf590b9c_0
mkl 2021.4.0 h06a4308_640
mkl-service 2.4.0 py37h7f8727e_0
mkl_fft 1.3.1 py37hd3c417c_0
mkl_random 1.2.2 py37h51133e4_0
munkres 1.0.7 py_1 bioconda
ncurses 6.4 h6a678d5_0
nspr 4.35 h6a678d5_0
nss 3.89.1 h6a678d5_0
numpy 1.21.5 py37h6c91a56_3
numpy-base 1.21.5 py37ha15fc14_3
openssl 1.1.1t h7f8727e_0
packaging 22.0 py37h06a4308_0
pcre 8.45 h295c915_0
pillow 9.4.0 py37h6a678d5_0
pip 22.3.1 py37h06a4308_0
ply 3.11 py37_0
pplacer 1.1.alpha19 h9ee0642_2 bioconda
prodigal 2.6.3 hec16e2b_4 bioconda
pyparsing 3.0.9 py37h06a4308_0
pyqt 5.15.7 py37h6a678d5_1
pyqt5-sip 12.11.0 py37h6a678d5_1
pysam 0.15.3 py37hda2845c_1 bioconda
python 3.7.16 h7a1cb2a_0
python-dateutil 2.8.2 pyhd3eb1b0_0
qt-main 5.15.2 h8373d8f_8
qt-webengine 5.15.9 hbbf29b9_6
qtwebkit 5.212 h3fafdc1_5
readline 8.2 h5eee18b_0
setuptools 65.6.3 py37h06a4308_0
sip 6.6.2 py37h6a678d5_0
six 1.16.0 pyhd3eb1b0_1
sqlite 3.41.2 h5eee18b_0
tk 8.6.12 h1ccaba5_0
toml 0.10.2 pyhd3eb1b0_0
tornado 6.2 py37h5eee18b_0
wheel 0.38.4 py37h06a4308_0
xz 5.2.10 h5eee18b_1
zlib 1.2.13 h5eee18b_0
zstd 1.5.5 hc292b87_0

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