A tool suite for a simple, streamlined and rapid evaluation of variant callsets
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Updated
Jun 10, 2024 - Nextflow
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
Structural variation and indel detection by local assembly
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Snakemake-based computational workflow for neoantigen prediction from diverse sources
ClairS - a deep-learning method for long-read somatic small variant calling
This repository includes the scripts used for analysis investigating the dynamics of indels in mammalian orthologous proteins and the examination of the ancestral reconstruction of multiple-character indels under the PIP.
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
Generic human DNA variant annotation pipeline
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
A Platypus-based workflow for indel calling
Structural variant and indel caller for mapped sequencing data
A Platypus-based variant calling pipeline for cancer data
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