WtP: Phage identification via nextflow and docker or singularity
-
Updated
Feb 20, 2024 - Nextflow
WtP: Phage identification via nextflow and docker or singularity
From QC to summary statistics
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
A simple fastp-MultiQC nextflow pipeline
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Filter a VCF to discard false positive variants
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
EuroBioc2020 SPEAQeasy workshop https://eurobioc2020.bioconductor.org by Nick Eagles and Josh Stolz. For more information about SPEAQeasy check http://research.libd.org/SPEAQeasy/. For an example on how to use this RNA-seq processing pipeline and analyze the output files check http://research.libd.org/SPEAQeasy-example/.
RNA-Seq pipeline
A repository with usage examples of various pipeline and workflow orchestration tools
modules for processing and analyzing single cell data using Nextflow
A nextflow pipeline for the analysis of 16S amplicon data built around RExMap
This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data
Add a description, image, and links to the nextflow-pipelines topic page so that developers can more easily learn about it.
To associate your repository with the nextflow-pipelines topic, visit your repo's landing page and select "manage topics."