Popular repositories

1. svaba svaba Public

   Structural variation and indel detection by local assembly

   C++ 225 44

2. SeqLib SeqLib Public

   C++ htslib/bwa-mem/fermi interface for interrogating sequence data

   C++ 133 36

3. VariantBam VariantBam Public

   Filtering and profiling of next-generational sequencing data using region-specific rules

   Makefile 74 10

4. bxtools bxtools Public

   Tools for analyzing 10X Genomics data

   Makefile 41 10

5. svlib svlib Public

   Toolkit for extracting SVs from long sequences and benchmarking variant callers

   C++ 13 2

6. pthread-lite pthread-lite Public

   Light-weight header library for C++ concurrency with pthread

   C++ 7 2