Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
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Updated
May 22, 2024 - Python
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
This recipe is dedicated to helping you make the best possible pizza dough for Neapolitan pizza.
Saccharomyces Genome Database (SGD) REST API wrapper
The consensus GEM for Saccharomyces cerevisiae
R code for identifying transcriptomic similarities in single-gene yeast deletion strains within the Deleteome compendium
Repo for: Chuong et al. (2024) DNA replication errors are a major source of adaptive gene amplification
Repo for: Avecilla et al (2022) Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics. PLOS Biology. doi:10.1371/journal.pbio.3001633
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
For the analysis and visualization of array-based genetic interaction screens
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Using NVIDIA Deepmind's Nucleotide Transformer to generate embeddings for yeast genomes.
SYSBIO repository of ENG4BIO group within Universitat Autònoma de Barcelona (UAB) mainly regarding K. phaffi modelling.
Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
Official and maintained implementation of the dataset paper "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures" [ICCVW 2023].
Microscopy data analysis for the paper: "Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"
Algorithm for round cells identification in the brightfield microscopy images.
Part of MSc Biology Project (1/2). This repo contains three different analysis pipelines, which all analyse microscopy images of yeast cells. Two calculate Sfp1 NC ratios, and one calculates nuclear and whole-cell volumes.
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