TCNN: A Transformer Convolutional Neural Network for artifact classification in whole slide images
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Updated
Apr 11, 2024 - Jupyter Notebook
TCNN: A Transformer Convolutional Neural Network for artifact classification in whole slide images
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
Scripts used for the "Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms" paper.
Pathology Atlas (English version of Patoloji Atlası)
Platform for identifying metaphase spreads in a population of cells from whole slide images using Computer Vision techniques
CLI tool to run specimen-level inference on whole slide images
Awesome List of Digital and Computational Pathology Resources
Classification of whole-slide images based on tumor infiltrating lymphocyte grades using image-level labels
Implementation of state of the art algorithms for uneven illomination correction in whole slide imaging
Viewer for multifocal-plane virtual microscope
🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
MarrowQuant is a user-friendly algorithm for the quantification of H&E bone marrow tissue biopsies in whole slide images, implemented as a series of QuPath Scripts. Keywords: Digital Pathology, Whole slide Imaging, QuPath, Bone Marrow, Adiposity
Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding
Displays list of virtual microscope slides that can be displayed by the Viewer
Deep Learning for medical imaging kaggle challenge for the MVA master 2021-2022. Classification of ISUP grades from Whole Slide Images.
Elm library providing encoder/decoder for automated slide analysis platform XML format (https://github.com/computationalpathologygroup/ASAP).
A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.
Delete the label image to deidentify a whole-slide image (WSI) with an optional GUI
This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
Image Processing and CV on Whole Slide Images
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