QuPath - Bioimage analysis & digital pathology
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Updated
Apr 26, 2024 - Java
QuPath - Bioimage analysis & digital pathology
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
A framework for high-performance medical image processing, neural network inference and visualization
Tools for computational pathology
Library for Digital Pathology Image Processing
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
cuCIM - RAPIDS GPU-accelerated image processing library
Digital pathology image viewer with support for human/machine generated annotations and markups.
Towards a general-purpose foundation model for computational pathology - Nature Medicine
A vision-language foundation model for computational pathology - Nature Medicine
⚡ Open-source software for deep learning-based digital pathology
Interoperable web-based slide microscopy viewer and annotation tool
Stain normalization tools for histological analysis and computational pathology
PAthological QUpath Obsession - QuPath and Python conversations
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
TiffSlide - cloud native openslide-python replacement based on tifffile
Cytomine-Core is the main web server implementing the Cytomine API
Full package for applying deep learning to virtual slides.
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