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@CirculatoryHealth

Circulatory Health - UMC Utrecht

Public and private repositories for work done within the Circulatory Health Program of the UMC Utrecht.
README.md

Welcome 👋

✨ You've reached the Circulatory Health Team GitHub. We are (medical) biologists, medical doctors, geneticists, bioinformaticians, and data scientists interested in solving medical problems with a burning 🔥 passion 💓 for cardiovascular diseases 🫀.

👯 We are always happy to collaborate on any subject in the field cardiovascular diseases.

🔭 GitHub Projects

You will find that most projects are private (only Team-members can view [and edit] these), some repositories are public. We aim to publish each repository associated to a publication from the team. Data associated to our analyses can be found on community-standard data- storage and -archiving repositories including EGA and Zenodo (just follow the link in the paper), or through DataverseNL.

📫 Follow us @CirculatHealth.

Copyright since 1636 | Center for Circulatory Health.

Pinned

  1. BlandAltman BlandAltman Public

    Example code of the Bland-Altman test.

    HTML 1

  2. LoFTK LoFTK Public

    The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes, identifying genes that are inactive in one or two copies, a…

    Perl 8 2

  3. gwas2cojo gwas2cojo Public

    gwas2cojo

    Python

Repositories

Showing 10 of 22 repositories
  • AE_20211201_YAW_SWVANDERLAAN_HDAC9 Public
    HTML 0 MIT 0 0 0 Updated Jun 1, 2024
  • gwas2cojo Public

    gwas2cojo

    Python 0 0 0 0 Updated May 30, 2024
  • QTLToolKit2 Public archive Forked from llandsmeer/QTLToolKit2

    A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).

    Shell 0 6 0 0 Updated Apr 20, 2024
  • LoFTK Public

    The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes, identifying genes that are inactive in one or two copies, and providing summary statistics for downstream analyses.

    Perl 8 CC-BY-SA-4.0 2 1 1 Updated Jan 5, 2024
  • AAO_IschemicStroke Public

    Additional figures and analyses for the age at onset of ischemic stroke meta-GWAS.

    C++ 0 0 0 0 Updated Dec 1, 2023
  • EntropyMasker Public

    A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained samples.

    Jupyter Notebook 2 1 2 2 Updated Oct 4, 2023
  • ExpressScan_Glycophorin Public

    Scripts used for the "Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms" paper.

    HTML 0 0 0 0 Updated Sep 12, 2023
  • CHARGE_1000G_CAC Public

    CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

    HTML 3 MIT 0 0 0 Updated Aug 29, 2023
  • EndoMT_in_AE Public
    HTML 1 0 0 0 Updated May 26, 2023
  • Inherited-cardiomyopathies Public

    This project aimed to to assess the prevalence of pathogenic variants associated with ARVC, DCM or HCM in the general UK population using UK Biobank data.

    R 2 CC-BY-SA-4.0 0 0 0 Updated Feb 3, 2023
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