sra
Here are 51 public repositories matching this topic...
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
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May 20, 2024 - Python
Access and Format Single-cell RNA-seq Datasets from Public Resources
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May 16, 2024 - R
Up-to-date SRA growth size visualization
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May 1, 2024 - Python
Download fastqs or supplementary files from GEO and upload to hca-util bucket
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Mar 26, 2024 - Shell
Builds a PEP from SRA or GEO accessions
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Feb 13, 2024 - Jupyter Notebook
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
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Feb 5, 2024 - Python
Interactive R package to quantify, analyse and visualise alternative splicing
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May 27, 2024 - R
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
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Jan 19, 2024 - Python
Automated mitochondrial genome assembly using SRA public data
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Dec 29, 2023 - Perl
Bioinformatics analysis of SARS-CoV-2
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Dec 28, 2023 - Perl
An SRA library through which web assembly is provided as an interface to generate SRA public and private keys client side
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Nov 4, 2023 - Rust
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
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Oct 11, 2023 - Python
Sequence Read Archive Classification
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Oct 10, 2023 - Python
Package for fetching metadata and downloading data from SRA/ENA/GEO
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Sep 17, 2023 - Python
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