Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
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Updated
Apr 3, 2024 - Python
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.
The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
A snakemake pipeline wrapping MitoZ and getOrganelle for de novo mitogenome assembly using short reads and subsequent QC.
Automated mitochondrial genome assembly using SRA public data
Comparing and evaluating mitogenome assemblers
Extraction of gene segments from genomes according to your gene boundary and genome dataset preparation
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