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ncbi-biosamples

Here are 4 public repositories matching this topic...

CDCgov / seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

bioinformatics-pipeline genbank ncbi-submission ncbi-genbank cdc sra ncbi-sra ncbi-biosamples gisaid gisaid-uploader biosample gisaid-format gisaid-upload seqsender ncird ncird-id cdc-influenza-division

Updated May 6, 2024
Python

stajichlab / biosample_metadata

Extract metadata from biosamples in NCBI

bioinformatics ncbi-sra ncbi-biosamples biosample

Updated Apr 12, 2021
Python

NAL-i5K / tripal_eutils

ncbi loader via the eutils interface

ncbi tripal tripal3 tripal3-compatible eutils ncbi-assembly ncbi-biosamples hacktoberfest2022

Updated Sep 13, 2023
PHP

enviro-lab / ncbi-submit

A tool to prepare files and run/monitor programmatic submissions to NCBI

ftp upload ncbi-genbank ncbi submission ncbi-sra ncbi-biosamples

Updated Mar 5, 2024
Python

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