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Aug 22, 2018 - R
single-cell-sequencing
Here are 18 public repositories matching this topic...
Script for my thesis of single cell rna seq
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Dec 28, 2018 - Python
SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.
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Sep 1, 2019 - C
(NOTE: This is a development fork, please refer to official repo at statgen: https://github.com/statgen/popscle) Freemuxlet methods and auxilary tools
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Oct 28, 2019 - C++
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
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Nov 3, 2020 - Jupyter Notebook
Single-Cell Data Science
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Nov 30, 2020 - Python
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
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May 5, 2021 - C++
A command-line utility, a la samtools, that helps to manage and manipulate single-cell data files
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Aug 27, 2021 - Python
This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.
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Feb 28, 2022 - R
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
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Jan 30, 2023 - Jupyter Notebook
A computational approach tool to predict Head and Neck Cancer affected patients from their single cell RNA seq data.
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Feb 1, 2023 - PureBasic
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
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May 18, 2023 - R
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
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Oct 4, 2023 - Python
Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
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Apr 21, 2024 - Jupyter Notebook
Tool for modelling of mitochondrial heteroplasmy
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May 3, 2024 - Python
Evaluating the Use of Bulk and Single-Cell Sequences in Phylogenetic Analyses of Multi-tumour Evolution
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May 14, 2024 - HTML
Brings SingleCellExperiment objects to the tidyverse
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May 19, 2024 - R
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
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May 21, 2024 - R
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