Script for my thesis of single cell rna seq
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Updated
Dec 28, 2018 - Python
Script for my thesis of single cell rna seq
SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.
A command-line utility, a la samtools, that helps to manage and manipulate single-cell data files
(NOTE: This is a development fork, please refer to official repo at statgen: https://github.com/statgen/popscle) Freemuxlet methods and auxilary tools
Evaluating the Use of Bulk and Single-Cell Sequences in Phylogenetic Analyses of Multi-tumour Evolution
Single-Cell Data Science
A computational approach tool to predict Head and Neck Cancer affected patients from their single cell RNA seq data.
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
Brings SingleCellExperiment objects to the tidyverse
Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
Tool for modelling of mitochondrial heteroplasmy
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
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