COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
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Updated
Jul 23, 2019 - Python
COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.
Create required reference genome index files for WGS data analysis
Sequencing data preprocessing
depiction of read distribution for outlier genes
Obtaining case-associated variants and correspondent genes (from control/case experiments) in BASH/R enviroment
Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]
Collecting Genotypes from ENA and make their SNPs
Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com
This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.
CREST-seq peak calling.
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
Tools to filter SAM/BAM files by percent identity and percent of matched sequence
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