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May 18, 2017 - PHP
phosphoproteomics
Here are 15 public repositories matching this topic...
Custom analysis of in vitro circadian proteomics and phosphoproteomics using multiple sets of 10plex TMT with two genotypes
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Nov 14, 2022 - R
It assigns the phosphorylation site in protein
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Aug 4, 2022 - R
Python pipeline to build empirical kinase networks and identify kinase signalling communities from quantitative phosphoproteomics data.
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Apr 24, 2024 - HTML
Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
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Apr 12, 2024 - Python
Some phosphoproteomics useful notebooks and sources
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Jun 15, 2022 - Jupyter Notebook
PhosNetVis is a web-based platform for integrated kinase enrichment analyses and interactive 2D/3D network visualizations of phosphoproteomics datasets.
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Mar 7, 2024 - JavaScript
DeepRescore2: deep learning prediction boosts phosphoproteomics-based discoveries through improved phosphopeptide identification
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Nov 2, 2023 - Python
An Ensemble Bioinformatic Platform to Empower Interactive Analysis of Quantitative Phosphoproteomics.
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Apr 10, 2024 - R
Estimate PTM hotspots in protein sequence alignments
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Feb 6, 2019 - Python
Analytical R Tools for Mass Spectrometry
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Jun 29, 2023 - R
PHOsphoproteomic dissecTiOn using Networks
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Jan 25, 2021 - Python
A project for exploring differentially active signaling paths related to proteomics datasets
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Jan 25, 2024 - Java
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
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Dec 22, 2023 - R
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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Feb 26, 2024 - R
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