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phosphorylation

Here are 8 public repositories matching this topic...

jdrudolph / photon

PHOsphoproteomic dissecTiOn using Networks

bioinformatics biology proteomics biological-data-analysis signaling-pathways pathways phosphoproteomics phosphorylation signaling-networks

Updated Jan 25, 2021
Python

KarrLab / bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

dna methylation epigenetics protein rna phosphorylation dna-damage proteoform post-transcriptional-regulation post-translational-modification crosslinks

Updated Oct 5, 2020
Python

frl21 / Phosphorylation_Prediction

This project is conduct research using deep learning to predict phosphorylation site in protein sequences

machine-learning bioinformatics protein-sequences phosphorylation post-translational-modification

Updated Feb 20, 2019
Jupyter Notebook

eliza-m / CrossSpeciesWorkflow

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…

phosphorylation cwl secondary-structure cwl-workflow post-translational-modification glycosylation lipid-modification sumoylation cell-localization acetylation

Updated Sep 6, 2020
Python

yxu132 / prot2vec_contextualvec

Model training for prot2vec-based phosphorylation site prediction

bioinformatics phosphorylation distributed-representations

Updated Aug 22, 2017
Python

mo-yoda / Drube_2021

This code was written and used for statistical analysis and visualisation of data included in Drube et al. 2021.

heatmap phosphorylation multiple-comparisons moving-window gpcrdb

Updated Jan 19, 2022
R

tairsha / taxa-specific-substitution-matrix

Algorithms for the generation of substitution matrices from intra-taxa variation data. Implemented and published on human genetic variation data.

bioinformatics genomics biology bioinformatics-pipeline proteomics phosphorylation amino-acids bioinformatics-algorithms substitution-models mutational-signatures bioinformatics-tool post-translational-modification mutation-rate

Updated Jun 18, 2021
Jupyter Notebook

Pathmanaban / Phospho_analysis

Scripts used for the phosho data analysis

python bioinformatics protein-structure human mutations phosphorylation proteome biophysics ptms functional-domain

Updated Mar 31, 2022
Jupyter Notebook

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