Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

Minor Variant Calling and Phasing Tools

Drug Response Estimation from single-cell Expression Profiles

Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)

Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.

Multipurpose tool for targeted variant calling of genetic polymorphisms in Mycobacterium Tuberculosis

Data and analysis scripts used in Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations

A GLUE project for Hepatitis C virus (HCV)

A GLUE project for hepatitis B virus (HBV).

This study assessed the spatial genetic variation in P. falciparum populations in Mali

Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.

Examine treatment outcomes, and predict the incidence of Tuberculosis

Personalised scoring system for lung cancer patients that enables ranking of the activated interventional nodes.

Flexible and disposable paper and plastic-based gel micropads for nematode handling, imaging and chemical testing

The SNP and gene datasets of M. Tuberculosis for drug resistance prediction.

A method to predict activating, deactivating and resistance mutations in kinases

Web application for HBV-GLUE

HCV drug resistance extension based on collaboration with PHE.

Compartmental model projecting cases, resistant cases, and deaths averted in Africa from 2021-2030 with a vaccine similar to RTS,S.

This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.