phage
Here are 36 public repositories matching this topic...
Old repository comprising code for my HTHSCI 3BM6 phage modelling project.
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May 10, 2021 - Jupyter Notebook
Prediction of bacterial host for phage
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Jun 2, 2022 - C++
A powerful deep learning (DL) tool and the trained models for the phage gene and protein identification with convolutional neural network (CNN).
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Nov 3, 2018 - Python
Configurable short read de novo assembly container using SPAdes and bbmap
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May 10, 2024 - Python
PhageOrder is a python package designed to reorder phage genomes based on its terminase subunit.
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Feb 26, 2024 - Python
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Jun 19, 2021 - Python
A toy Agent-Based Model of the coevolution dynamics between bacteria and phages, with a focus on environment structure
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Jul 8, 2022 - Julia
An Agent-Based Model simulating the coevolution dynamics between phages and bacteria. Was my essay in the ABM course by SFI
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Nov 17, 2023 - NetLogo
The phage proteomic tree was a breakthrough in evolution, taxonomy, and phylogenetics ... but nobody realized its global importance
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Apr 23, 2017 - Perl
From protein to phage phylogeny in single line!
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May 12, 2021 - Shell
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
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Mar 1, 2024 - Shell
.m, .MAT, .PDF, .XLS files for "Canonical host-pathogen tradeoffs subverted by mutations with dual benefits"
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Sep 24, 2022 - MATLAB
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
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Jul 19, 2023 - Jupyter Notebook
Quick and dirty scripts for simple biology
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Jul 4, 2021 - Shell
Report, proposal, and mvp implementation of a simple tool for use in finding motifs in genome data. 🧬
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Mar 1, 2022 - Python
Repository containing trained YOLOv5 object detection models used within OnePetri for Petri dish and plaque detection.
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Mar 25, 2023
Active prophage detection in metagenome sequencing read coverages
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Jan 25, 2024
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