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To setup:

  • Create a new conda environment
  • Activate new conda environment
  • Download requirements.txt file (pip install -r requirements.txt)
  • Download DELPHI & point its top directory to this one

To run simply jump right into the existing .ipynb notebooks. Either use the trained models in /final_models or train your own models with your own dataset by editing the dataset name and model save path in F3_Hit_Rate_Benchmarking.ipynb and hitting run.

The ER datafiles (if not present) will be generated upon the first run

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Code for Next Generation Phage Display Motif Denoising and Identification

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