MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
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Updated
May 30, 2024 - HTML
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Open source bioinformatics and computational biology toolbox written in F#.
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Needleman–Wunsch algorithm implementation in Lua.
Needleman–Wunsch algorithm implementation in Go.
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
Nucleic and amino acid primitive types
MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.
Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
Determine the thermodynamic properties for nucleotide conversions
Convert output from Samtools pileup into a matrix.
Protein to RNA reverse translation
📊🧬 Dinucleotide frequencies in the genome of model organisms 🐁🦠
Numerical Encoding for Human Genetic Variants
🧬 Python utilities for working with nucleotide sequence strings.
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
Translation of the FASTA file with genetic code into aminoacid code.
In this assignment, I had to create an application for a team of Bio-Informaticians to work on nucleotide multiple sequence alignments (MSA). The application is a command line application, no GUI is provided.
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
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