Bioinformatic cis-motif-, H3K27me3 correlation- and GO-analysis conducted for my master's thesis

Transceiver Framework: A framework for concurrent multi stage processing of data & MDP: An online motif detector and predictor embedded in the transceiver framework.

Shiny app for screening for core promoter occurrences close to expressed transposons TSSs.

motif locator for plant resistance genes.

A deep learning approach to synthesize heterodimeric DNA motifs

Enrichment analysis of motifs with ancient and recent CNEs

Random Graph Generation

Proteome-wide motif search for specific PTM(Post Translational Modification)

Rapid and sensitive local alignment of genomic sequences employing motif anchors

Automatic Motif Detection wrapper for dotmotif

GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis

English Project

Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.

Protein phosphorylation motif finder based on clustering analysis

Motif analysis in gene regulatory networks

Pipeline webscraping to extract and download Solanum lycopersicum promotors

An integrative toolkit for detecting cell type-specific regulators

Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

squid repository for manuscript analysis

Fast Motif Finder