Siteblast

Siteblast expands local alignment strategy for comparative sequence analysis aiming conserved motif discovery

Getting Started

Siteblast is under development.

Installing

make 
make install

Demo is under construction.

Running the tests

Run test witn make test

And coding style tests

Explain what these tests test and why

Give an example

Deployment

Add additional notes about how to deploy this on a live system

Built With

Blastz

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
.idea		.idea
JASPAR		JASPAR
distribution		distribution
program		program
#dna.c#		#dna.c#
6mer_cons_pat.list		6mer_cons_pat.list
CMakeLists.txt		CMakeLists.txt
IUPAC_nucleotide_pattern.txt		IUPAC_nucleotide_pattern.txt
Makefile		Makefile
MatrixDir.zip		MatrixDir.zip
README.md		README.md
args.c		args.c
args.h		args.h
astack.c		astack.c
blastz		blastz
bz_align.c		bz_align.c
bz_all.h		bz_all.h
bz_census.c		bz_census.c
bz_census.h		bz_census.h
bz_chain.c		bz_chain.c
bz_dna.c		bz_dna.c
bz_dna.h		bz_dna.h
bz_extend.c		bz_extend.c
bz_hit19.c		bz_hit19.c
bz_hit19.h		bz_hit19.h
bz_inner.c		bz_inner.c
bz_iupac.c		bz_iupac.c
bz_iupac.decode		bz_iupac.decode
bz_iupac.h		bz_iupac.h
bz_main.c		bz_main.c
bz_main.h		bz_main.h
bz_print.c		bz_print.c
bz_print.h		bz_print.h
bz_protein.c		bz_protein.c
bz_protein.h		bz_protein.h
bz_site.c		bz_site.c
bz_site.h		bz_site.h
bz_table.c		bz_table.c
bz_table.h		bz_table.h
bz_weight.c		bz_weight.c
bz_weight.h		bz_weight.h
charvec.c		charvec.c
charvec.h		charvec.h
consensus_pat.list		consensus_pat.list
createIUPACmatrixes		createIUPACmatrixes
createIUPACmatrixes.c		createIUPACmatrixes.c
det-marginal-prob.c		det-marginal-prob.c
det-marginal-prob.h		det-marginal-prob.h
dna.c		dna.c
dna.h		dna.h
edit.c		edit.c
edit.h		edit.h
int_types.h		int_types.h
matrices		matrices
matrix_list.txt		matrix_list.txt
nib.c		nib.c
nib.h		nib.h
program.fdb_latexmk		program.fdb_latexmk
program.fls		program.fls
program.log		program.log
program.pdf		program.pdf
program.synctex.gz		program.synctex.gz
program.tex		program.tex
recognize.c		recognize.c
recognize.h		recognize.h
seedlist.c		seedlist.c
seedlist.h		seedlist.h
seq.c		seq.c
seq.h		seq.h
siteblast		siteblast
test.aln		test.aln
typeIandII.png		typeIandII.png
util.c		util.c
util.h		util.h

dieterich-lab/siteblast

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