Image-processing software for cryo-electron microscopy
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Updated
May 8, 2024 - C++
Image-processing software for cryo-electron microscopy
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
A Go package for engineering organisms.
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
3d engine implementation in DNA code!
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
Processing, quality control and analysis of GAM datsets
Package for processing and analyzing glycans and their role in biology.
Course material for the Collaboratory Workshop "Machine Learning with Python"
⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Multiview Intercellular SpaTial modeling framework
A toolkit for painting agent-based mesoscale molecular simulations and illustrations.
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
A easy-to-use Python API for Primer3 primer design.
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