Code and manuscript files for Aaron and Arianne's differential abundance methodology manuscript.
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Updated
May 23, 2017 - TeX
Code and manuscript files for Aaron and Arianne's differential abundance methodology manuscript.
Very fast method to read number of events from some / all FCS files in a directory
Hierarchical Nearest Neighbor Descent, In-Tree, and Clustering (Teng Qiu, Yongjie Li, Pattern Recognition, 2023)
Batch effect correction and automated gating of CyTOF data
Opens two or more FCS files and creates new files that contain only the Channels common to all.
Plots the NRS (non-redundancy score) of selected markers from one or more FCS files
Functions and scripts for analysing and normalising CyTOF data
Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.
Official implementation of GateNet
A handy spreadsheet for looking up elemental isotopes by symbol or mass.
R Script to plot the average event rate in flow or mass cytometry (FCS) files
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Single Cell Outlier Selector - quickly find outliers in your single-cell data
Fast auto-cleanup of CyTOF data
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