Inflated i3d network with inception backbone, weights transfered from tensorflow
Python version of the amazing Reaction Mechanism Generator (RMG).
The open source initiative for anonymized, elite-level athletic motion capture data. Run by Driveline Baseball.
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
Python toolbox for biomechanics analysis
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
How to analyze molecular dynamics data with PyEMMA
An Open-Source Python Package to Facilitate Research in Biomechanics
Toolbox for including enzyme constraints on a genome-scale model.
STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.
Automated reaction pathway search for gas-phase molecules
A Differentiable Reacting Flow Simulation Package in PyTorch
Computational Methods in Chemical Engineering (UMass Lowell, Spring 2024); Prof. Valmor F. de Almeida.
CFD solver (based on OpenFOAM) for laminar reacting flow with detailed kinetic mechanisms based on OpenSMOKE++
AutoTST: A framework to perform automated transition state theory calculations
Simple tool to download videos from kinetics dataset.
Enzyme-constrained genome-scale models in python
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