Quickly search, compare, and analyze genomic and metagenomic data sets.
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Updated
May 7, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
βHΞDI (Biomarker-based Heuristic Engine for Dengue Identification) is a computational tool designed for the identification of Dengue virus serotypes in wastewater next-generation sequencing data.
Fast and space-efficient taxonomic classification of long reads
Inference of ploidy and heterozygosity structure using whole genome sequencing data
modular k-mer count matrix and Bloom filter construction for large read collections
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
SuperSampler, an efficient scaled size sketching and sketch comparison tool
a versatile toolkit for k-mers with taxonomic information
counts k-mers, written in rust
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
instructions, python and R code for generating lava lamp plots of kmer coverage
Convert python string to hashed kmers and back again
A kmer-based homology searching tool
K-mer counting algorithms and count-data utilities for the BioJulia framework
Context aware Move To Front Transform based compressor
Decompose a k-mer profile into several peaks each representing a copy number.
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