Accurate metagenomic profiling && Fast large-scale sequence/genome searching

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.

ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data

discover-virome: identify and quantify viruses from metagenomic assemblies

quantify-virome: identify and quantify viruses from metagenomic shotgun sequences

A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.

microbialites stromatolites metagenomes metagenomics denovo-assembly

Viral contig analysis (hecatomb-lite)

website of tomato virome database