Skip to content

Issues: jerryji1993/DNABERT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

62 Open 45 Closed
62 Open 45 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

what is the masking ratio
#119 opened May 8, 2024 by abhidipbhattacharyya
Release pretraining data?
#118 opened May 6, 2024 by leannmlindsey
Request for Detailed Information on Training the Tokenizer
#117 opened Mar 14, 2024 by a-green-hand-jack
Unable to get motif image
#115 opened Mar 2, 2024 by wangyb97
3
the seq longer than 512
#113 opened Oct 7, 2023 by SSHH007
install packages using pip
#112 opened Oct 3, 2023 by lingfengxu
2
Shape of atten.npy
#111 opened Aug 25, 2023 by salehsereshkiucr
Pretraining error
#109 opened Jul 10, 2023 by liu3zhenlab
attention maps generated in pre-training stage or fine-turning stage
#108 opened Jul 6, 2023 by Shicheng-Guo
AssertionError in kmer2seq for motif search
#105 opened May 24, 2023 by Vejni
How to get the high attention regions of a given sequence.
#104 opened May 18, 2023 by ytye2010
Importing error of Transformers
#103 opened May 3, 2023 by Rofidagamal
4
There is a bug about attention mask in source code
#102 opened Apr 27, 2023 by Jason941
How can I create my own processor?
#101 opened Apr 26, 2023 by dominiclopez391
1
How Can I track model loss and accuracy of each epoch during fine-tuning, to make sure model is stable?
#99 opened Apr 13, 2023 by XuanrZhang
early_stop not being triggered?
#98 opened Apr 6, 2023 by jackievaleri
Changing max_seq_length does not update max_length in config.json
#97 opened Apr 4, 2023 by jackievaleri
How to divide our own dataset into test, dev and train data and assign them labels for fine tuning process
#96 opened Mar 8, 2023 by smruti241
2
provided example does not use GPU
#95 opened Feb 24, 2023 by ekg
1
Can you use the pre-trained BERT models, but add novel tokens to the vocabulary?
#94 opened Feb 14, 2023 by mepster
comparing DNABERT to where it was forked from transformers
#93 opened Feb 14, 2023 by mepster
Transformers not recognized in test run
#92 opened Jan 28, 2023 by leannmlindsey
Reverse complement of a sequence
#91 opened Jan 13, 2023 by ariannap88
How to use --task_name dnasplice?
#90 opened Dec 22, 2022 by ajoudaki
Readme section 5.2
#89 opened Dec 16, 2022 by mepster
4
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.