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22 Open 115 Closed
22 Open 115 Closed
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Issues list

plot err potential_problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?)
#146 opened Apr 10, 2024 by zskey-zn
3
unable to start device PNG
#145 opened Mar 26, 2024 by wwwfreya
1
solve speckiness problem of smudgeplot 0.3.0 Oriel Upcoming version of smudgeplot potential_problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?)
#144 opened Mar 22, 2024 by KamilSJaron
@KamilSJaron
1
script execution never ends
#142 opened Feb 25, 2024 by simleopold
2
ploidyplot never finishes potential_problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?)
#141 opened Feb 12, 2024 by AlcaArctica
2
Interpretation of (maybe) hybrid genomes - multiple species 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version genomescope_included smudgeplot_included if smudgeplot was posted with the quesiton / problem
#140 opened Feb 9, 2024 by Sofieagerbaek
1
smudgeplot.py hetkmers massive memory and walltime required 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version wontfix This will not be worked on
#139 opened Feb 1, 2024 by tallnuttrbgv
3
none results generating with huge dump files 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version potential_problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?)
#137 opened Jan 7, 2024 by zhengyanstu
6
Process was automatically killed 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version performance issues regarding scalability and performance of the method.
#136 opened Nov 2, 2023 by yanjw123
3
Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?) 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope_included smudgeplot_included if smudgeplot was posted with the quesiton / problem
#133 opened Sep 13, 2023 by margaretc-ho
6
Issues with make exec/PloidyPlot 0.3.0 Oriel Upcoming version of smudgeplot bug Something isn't working dev for issues related to development branch
#130 opened Aug 29, 2023 by Kat0610
@KamilSJaron
4
FEEDBACK WANTED: Installation and running instructions for beta-version of Smudgeplot 0.3.0 Oriel 0.3.0 Oriel Upcoming version of smudgeplot dev for issues related to development branch
#129 opened Aug 23, 2023 by KamilSJaron
6
Allow other plotting styles 0.3.0 Oriel Upcoming version of smudgeplot dev for issues related to development branch enhancement New feature or request
#128 opened Aug 23, 2023 by KamilSJaron
2 of 4 tasks
@KamilSJaron
Prepare a testing battery 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot dev for issues related to development branch genomescope_included smudgeplot_included if smudgeplot was posted with the quesiton / problem
#127 opened Aug 22, 2023 by KamilSJaron
estimate_1n_coverage_1d_subsets averages over two distinct high peaks 0.3.0 Oriel Upcoming version of smudgeplot enhancement New feature or request
#123 opened Aug 17, 2023 by KamilSJaron
Interpreting smudgeplot output 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope_included smudgeplot_included if smudgeplot was posted with the quesiton / problem
#117 opened Jun 12, 2023 by eweinheimer
10
half genome length from tutorial-strawberry genomescope_included potential_problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?) smudgeplot_included if smudgeplot was posted with the quesiton / problem
#84 opened Mar 2, 2021 by fancyge
4
new smudgeplot mascot? wontfix This will not be worked on
#81 opened Dec 18, 2020 by KamilSJaron
2
Using smudgeplot with very high ploidy levels smudgeplot_included if smudgeplot was posted with the quesiton / problem
#66 opened Jul 31, 2020 by cmdoret
4
Update wiki 0.3.0 Oriel Upcoming version of smudgeplot
#54 opened May 20, 2020 by KamilSJaron
3 tasks
@KamilSJaron
2
Bad examples of smudgeplot smudgeplot_included if smudgeplot was posted with the quesiton / problem
#37 opened May 15, 2019 by KamilSJaron
3
set up travis testing performance issues regarding scalability and performance of the method.
#8 opened Aug 24, 2018 by KamilSJaron
@KamilSJaron
1
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