Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
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Updated
May 30, 2024 - Visual Basic .NET
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
Drawing chemical compound structures and glycan structures with capabilities to search against the KEGG databases
📊 A universal enrichment tool for interpreting omics data
QIIME 2 plugin for visualizing and analyzing pathway information based on gene family abundances
Function Enrichment analysis and Network construction
Check the neighbouring genes in KEGG genomes for KEGG Orthology (KO), domains and keywords
KEGG-Chem is a Python program designed to retrieve KEGG compounds and associated data using an input of KEGG orthologues or modules, and can also retrieve SMILES, SDF files, and more from PubChem.
A Python script for efficiently retrieving and organizing module-related data from the KEGG database, including entries, symbols, pathway IDs, and names.
KEGG Module Evaluation Tool
Python wrapper for ipath3
A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
Library for KEGG pathway enrichment analysis
Build Annotation package by using information from KEGG, NCBI, Ensembl
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
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