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1. fasta-extractor fasta-extractor Public

   fasta-extractor.pl extracts ORFs from a genomic fasta file based on coordinates in an ID list, generating corresponding sequences from two input files: genomic_fasta-file and id_list-file.

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2. NCBIClosestStrainFetcher NCBIClosestStrainFetcher Public

   A Python utility to extract closest reference strain data from the NCBI database using assembly identifiers from a TSV input file (gtdbtk.bac120.summary.tsv). The script outputs detailed strain inf…

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3. BV-BRC-Genome-Downloader BV-BRC-Genome-Downloader Public

   A command-line utility for efficiently downloading genome data from the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), supporting multiple file types and providing failure logs for tr…

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4. AMRFinderPlus-Matrix AMRFinderPlus-Matrix Public

   AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress respon…

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5. stouffers-method-statistical-analysis stouffers-method-statistical-analysis Public

   The "stouffers_method.R" code performs statistical analysis using Stouffer's method to combine p-values for a group of entities from tab-separated input data, and outputs the results to a new tab-s…

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6. Average-KL-Divergence-Calculator Average-KL-Divergence-Calculator Public

   average-KL-divergence-calculator.py is a Python script that calculates the average KL divergence for each FASTA file in a directory and produces separate output files and a combined output file wit…

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