GenomeTools genome analysis system.
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Updated
Feb 10, 2024 - C
GenomeTools genome analysis system.
Python programs for processing GFF3 files
A genome visualization python package for comparative genomics
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Convert sequence IDs between ucsc/refseq/genbank
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Genome annotation data analysis and management implemented in pure Python
Extracts information from GFF and prepare them in bed format
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
BED-to-GFF3 converter that runs in parallel
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