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May 13, 2019 - Python
genome-assembly
Here are 259 public repositories matching this topic...
Improved Phased Assembler: structured documentation and results of testing for Australian compute infrastructures
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Oct 8, 2020
Repo containing all scripts associated with huhu nanopore data
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Apr 16, 2024 - Shell
This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes…
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Jan 14, 2021 - Shell
Genome sequencing through the generation of maximal non branching path in the read graph
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Mar 28, 2021 - Jupyter Notebook
This is the working repository for the genome sequencing assembly. De-novo genome assembly and assessment.
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Oct 26, 2023 - HTML
De novo genome assembly of subset of the durian fruit genome.
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May 7, 2024 - Shell
a slurm configuration analytical pipline for the analysis of the pacbiohifi sequencing genomes using the verkko, hifiasm and the genomeasm4pg. only provide the link to the sequencing or the files with the folder and rest it will do the work
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May 2, 2024 - Shell
Fast and memory-efficient noisy read overlapping with KD-trees
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Jul 24, 2017 - C++
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Jan 2, 2018 - Shell
Lift same species genome co-ordinates from one assembly to another
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Jun 28, 2018 - Python
Pipeline for de novo assembly of bacterial genomes from paired-end Illumina reads
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May 11, 2022 - Python
Basic-Operational De-Bruijn graph Builder (BODBuilder) is automatic program building De-Bruijn graph from given set of sequences. Self-pruning builder and errors estimator.
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Nov 15, 2022 - Python
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Aug 31, 2023 - Python
Data Analysis for Genomics, Euler Path for Genome Assembly.
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Aug 26, 2023 - Python
MAGset is a tool to analyze and compare MAGs of known species
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Mar 26, 2024 - Java
Nextflow pipeline to assemble genomes from nanopore reads.
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May 6, 2024 - Nextflow
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Nov 10, 2023 - Python
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