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Pinned

  1. powerbacgwas powerbacgwas Public

    PowerBacGWAS: Power calculations for Bacterial GWAS

    Python 9

  2. amr_efm_wgs amr_efm_wgs Public

    ARIBA-based pipeline for genotypic prediction of AMR from whole-genome sequences of Enterococcus faecium

    Python 4

  3. mrsa_snp_cut-off mrsa_snp_cut-off Public

    R

  4. phylogenetic_clustering phylogenetic_clustering Public

    Script to perform phylogenetic partitioning/clustering

    R

  5. scripts scripts Public

    variety of different bioinformatic scripts

    Python

  6. ward_movement_plot ward_movement_plot Public

    R script used to plot hospital ward visits on a timeline, along with sampling information

    PostScript