⚡ ♒ Rapid prokaryotic genome annotation
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Updated
Apr 10, 2024 - Perl
⚡ ♒ Rapid prokaryotic genome annotation
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Eukaryotic Genome Annotation Pipeline
Extensive de-novo TE Annotator
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Genomic Data Retrieval with R
convert various features into a GFF-like file for use in genome browsers
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
A set of workflows written in Nextflow for Genome Annotation.
Earl Grey: A fully automated TE curation and annotation pipeline
Read Assembly and Annotation Pipeline Tool
A fully automated gene annotator from RNA-Seq expression data
Example client programs for Saphetor's VarSome annotation API
Genome Annotation Without Nightmares
Tools to annotate genomes using long read transcriptomics data
Galaxy tools for Genome Annotation
A parallel wrapper for LTR_FINDER
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